Reduced Operations During Harvard Winter Recess

The SBDB will be operating at a reduced level between Dec 26 2025 and Jan 1 2026 due to Harvard Winter Recess. Deposition credential requests and dataset release requests during this time will be handled following this time period.




Datasets from the University of California, San Diego




X-Ray Diffraction data from Patiria miniata Hop1 chromatin binding region, source of 9MYP structure

Zinc anomalous SAD dataset


X-Ray Diffraction data from Schistosoma mansoni Hop1 chromatin binding region, source of 9MUG structure

Zinc SAD dataset


X-Ray Diffraction data from Citrobacter BubCD(D104A/Y370F)-BubB-BubA(155-229), source of 9EAV structure

native dataset


X-Ray Diffraction data from Citrobacter BubCD(D104A)-BubB, source of 9EAE structure

native dataset


X-Ray Diffraction data from Citrobacter BubCD(D104A)-BubA(155-229), source of 9EA8 structure

native dataset


X-Ray Diffraction data from Citrobacter BubCD D104A mutant, source of 9EA5 structure

Native dataset


X-Ray Diffraction data from Citrobacter BubCD, source of 9EA4 structure

Native dataset


X-Ray Diffraction data from E1(CubD):E2(CubB):Ub(CubA) complex, form 2, source of 8TYZ structure

Single-wavelength dataset


X-Ray Diffraction data from E1(CubD):E2(CubB):Ub(CubA) complex, form 1, source of 8TZ0 structure

Single-wavelength dataset


X-Ray Diffraction data from Ensifer aridi DUB(CubC)E33A:Ubl(CubA) complex, form 2, source of 8TYY structure

Single-wavelength dataset


X-Ray Diffraction data from Ensifer aridi DUB(CubC):Ubl(CubA) complex, form 1, source of 8TYX structure

Single-wavelength dataset


X-Ray Diffraction data from Enterobacter cloacae Cap2 bound to CdnD02 C-terminus, Apo state, source of 7TSX structure

Native dataset to 1.77A


X-Ray Diffraction data from Enterobacter cloacae Cap2:cGAS complex, AMP-bound state, source of 7TSQ structure

Native dataset to 2.11 A resolution


X-Ray Diffraction data from E. coli CapP C-terminal domain, I99M mutant, source of 7T5V structure

Native data


X-Ray Diffraction data from E. coli CapH C-terminal domain, source of 7T5W structure

Native data


X-Ray Diffraction data from E. coli CapH N-terminal domain, source of 7T5U structure

Native data


X-Ray Diffraction data from Thauera sp. K11 CapP, source of 7T5T structure

Selenomethione SAD (peak) data


X-Ray Diffraction data from Thauera sp. K11 CapP, source of 7T5T structure

Native data


X-Ray Diffraction data from SARS-CoV-2 N protein RNA-binding domain bound to single-domain antibody B6, source of 7R98 structure

Native dataset


X-Ray Diffraction data from SARS-CoV-2 N protein RNA-binding domain bound to single-domain antibody C2, source of 7N0R structure

Process to 1.42 A


X-Ray Diffraction data from SARS-CoV-2 N protein C-terminal domain bound to single-domain antibody E2, source of 7N0I structure

Native dataset


X-Ray Diffraction data from V. polyspora Hop1 PHD-WHD, source of 7M0P structure

Zinc anomalous SAD dataset for V. polyspora Hop1 PHD-WHD domain


X-Ray Diffraction data from SARS-CoV-2 Nucleocapsid N2b domain, source of 6WZQ structure

Native dataset for SARS-CoV-2 Nucleocapsid (N) dimerization domain, P21 form


X-Ray Diffraction data from SARS-CoV-2 Nucleocapsid N2b domain, source of 6WZO structure

Native dataset for SARS-CoV-2 Nucleocapsid (N) dimerization domain, P1 form


X-Ray Diffraction data from Vibrio metoecus NucC, trimer form, source of 6UXF structure

Native dataset for apo trimer form of Vibrio metoecus NucC


X-Ray Diffraction data from P. aeruginosa ATCC27853 NucC, D73N mutant, source of 6Q1H structure

Process to 1.45 A in XDS


X-Ray Diffraction data from E. coli MS115-1 CdnC:HORMA-deltaN complex, source of 6U7B structure

Native dataset


X-Ray Diffraction data from Rhizobiales Pch2, source of 6PB3 structure

SAD dataset with selenomethionine-derivatized protein. One chain in AU; P6 symmetry reconstructs homo-hexamer


X-Ray Diffraction data from E. coli MS115-1 HORMA:CdnC:Pch2 complex, source of 6P8V structure

Collected at Selenium peak wavelength with selenomethionine-derivatized protein, but no signal. Can process as a native dataset.


X-Ray Diffraction data from P. aeruginosa CdnD:HORMA2:Peptide 1 complex, source of 6P8U structure

Native dataset


X-Ray Diffraction data from P. aeruginosa ATCC27853 HORMA1:HORMA2:Peptide 1 complex, source of 6P8S structure

Native dataset


X-Ray Diffraction data from P. aeruginosa ATCC27853 HORMA2, source of 6P8R structure

Selenomethionine-derivatized SAD dataset


X-Ray Diffraction data from P. aeruginosa ATCC27853 HORMA2, source of 6P8R structure

Native dataset


X-Ray Diffraction data from P. aeruginosa ATCC27853 HORMA1, source of 6P8P structure

NaBr soak dataset (SAD)


X-Ray Diffraction data from P. aeruginosa ATCC27853 HORMA1, source of 6P8P structure

Native dataset


X-Ray Diffraction data from P. aeruginosa ATCC27853 HORMA2-deltaC, source of 6P8O structure

Native dataset


X-Ray Diffraction data from P. aeruginosa ATCC27853 CdnD D62N/D64N mutant, ATP-bound, source of 6P8J structure

Native dataset


X-Ray Diffraction data from P. aeruginosa ATCC27853 CdnD, Apo form 1, source of 6P82 structure

Single-wavelength anomalous dataset (selenomethionine)


X-Ray Diffraction data from E. coli MS115-1 CdnC, ATP-bound (Selenomethionine), source of 6P80 structure

Single-wavelength selenomethionine anomalous dataset


X-Ray Diffraction data from E. coli MS115-1 CdnC, ATP-bound, source of 6P80 structure

Native dataset


X-Ray Diffraction data from E. coli MS115-1 NucC, 5'-pApA bound form, source of 6P7Q structure

450 frames, 0.2 degrees per frame


X-Ray Diffraction data from E. coli MS115-1 NucC, cAAA bound form, source of 6P7P structure

900 frames, 0.2 degrees per frame


X-Ray Diffraction data from E. coli MS115-1 NucC, Apo form, source of 6P7O structure

SAD data, two 30-degree wedges 180 degrees apart


X-Ray Diffraction data from E. coli MS115-1 NucC, Apo form, source of 6P7O structure

Native diffraction data


X-Ray Diffraction data from C. glabrata Csm1:S. cerevisiae Dsn1(71-110) complex, source of 6MJE structure

Native dataset for C. glabrata Csm1:S. cerevisiae Dsn1(71-110) complex


X-Ray Diffraction data from Candida glabrata Csm1:Dsn(43-67DD) complex, source of 6MJC structure

Native dataset for Candida glabrata Csm1:Dsn(43-67DD) complex


X-Ray Diffraction data from Candida glabrata Csm1:Dsn1(14-72) complex, source of 6MJB structure

Native dataset for Candida glabrata Csm1:Dsn1(14-72) complex


X-Ray Diffraction data from Candida glabrata Csm1:Mam1 complex, source of 6MJ8 structure

Two native datasets from different crystals, which were indexed separately then scaled together to give the final dataset for refinement.


X-Ray Diffraction data from Eremothecium gossypii Shu1:Shu2 complex, source of 6DEX structure

Zinc-anomalous SAD dataset for Eremothecium gossypii Shu1:Shu2 complex


X-Ray Diffraction data from S. cerevisiae Csm1-Dse3 complex, source of 6DEI structure

Single-wavelength dataset for S. cerevisiae Csm1-Dse3 complex


X-Ray Diffraction data from M. musculus SYCP3 residues 105-248, source of 6DD9 structure

Selenomethionine SAD dataset for M. musculus SYCP3 105-248, P1 crystal form


X-Ray Diffraction data from M. musculus SYCP3 residues 105-248, source of 6DD8 structure

Selenomethionine SAD dataset for M. musculus SYCP3 105-248, P21 crystal form


X-Ray Diffraction data from S. cerevisiae Zip2(499-704):Spo16 complex, source of 6BZG structure

SeMet SAD dataset, C2 crystal form


X-Ray Diffraction data from S. cerevisiae Zip2(499-704):Spo16 complex, source of 6BZG structure

Native dataset, P212121 crystal form


X-Ray Diffraction data from S. cerevisiae Zip2(499-704):Spo16 complex, source of 6BZF structure

Native dataset, C2 crystal form


X-Ray Diffraction data from H. sapiens TRIP13 E253Q + ATP, source of 5VQA structure

Native dataset for H. sapiens TRIP13 E253Q + ATP


X-Ray Diffraction data from H. sapiens TRIP13 E253Q, source of 5VQ9 structure

Native dataset for hTRIP13 E253Q Apo state


X-Ray Diffraction data from Csm1-Ulp2-Tof2 complex, source of 53VN structure

Native dates for Csm1 bound to Ulp2-Tof2 fusion


X-Ray Diffraction data from Human Dpf3 double-PHD domain bound to histone H3 tail peptide with monomethylated K4/acetylated K14, source of 5SZC structure

Native data for PDB entry 5SZC


X-Ray Diffraction data from Human Dpf3 double-PHD domain bound to histone H3 tail peptide with acetylated K14, source of 5SZB structure

Native data for PDB 5SZB


X-Ray Diffraction data from Human Dpf3 double-PHD domain bound to histone H3 tail peptide with acetylated K14, source of 5SZB structure

Zinc SAD data for PDB entry 5SZB


X-Ray Diffraction data from S. cerevisiae Csm1:Ulp2 complex, source of 5V1A structure

Native dataset for S. cerevisiae Csm1:Ulp2 complex


X-Ray Diffraction data from C. elegans HTP-2 bound to HIM-3 closure motif, source of 4TZS structure

Native data for C. elegans HTP-2 bound to HIM-3 closure motif, P212121 form


X-Ray Diffraction data from C. elegans HTP-1 bound to HTP-3 motif-1, source of 4TZQ structure

Native data for C. elegans HTP-1 bound to HTP-3 motif-1


X-Ray Diffraction data from C. elegans HTP-1 bound to HIM-3 closure motif, source of 4TZO structure

Native data for C. elegans HTP-1 bound to HIM-3 closure motif


X-Ray Diffraction data from C. elegans HTP-2 bound to HTP-3 motif-6, source of 4TZN structure

Native data for C. elegans HTP-2 bound to HTP-3 motif-6


X-Ray Diffraction data from C. elegans HTP-2 bound to HTP-3 closure motif 1, source of 4TZM structure

Native data for C. elegans HTP-2 bound to HTP-3 closure motif 1


X-Ray Diffraction data from C. elegans HTP-2 bound to HIM-3 closure motif, source of 4TZL structure

Native data for C. elegans HTP-2 bound to HIM-3 closure motif, P21 form


X-Ray Diffraction data from C. elegans HIM-3 bound to HTP-3 closure motif-4, source of 4TZJ structure

Native data for C. elegans HIM-3 bound to HTP-3 closure motif-4


X-Ray Diffraction data from S. cerevisiae Hrr25:Mam1 complex, source of 5CZO structure

Native dataset for Hrr25:Mam1 complex, form 2


X-Ray Diffraction data from S. cerevisiae Hrr25:Mam1 complex, source of 5CYZ structure

Native diffraction data for S. cerevisiae Hrr25:Mam1, form 1


X-Ray Diffraction data from S. cerevisiae Hrr25, source of 4XHL structure

S. cerevisiae Hrr25 bound to inhibitor CK1-7


X-Ray Diffraction data from C. glabrata Hrr25, source of 4XHH structure

C. glabrata Hrr25 in Apo state


X-Ray Diffraction data from C. glabrata Hrr25, source of 4XHG structure

C. glabrata Hrr25 bound to ADP in Formate buffer


X-Ray Diffraction data from C. glabrata Hrr25, source of 4XH0 structure

C. glabrata Hrr25 bound to ADP in Ammonium sulfate buffer


X-Ray Diffraction data from C. elegans PCH-2 SeMet, source of 4XGU structure

Selenomethionine dataset for C. elegans PCH-2


X-Ray Diffraction data from C. elegan PCH-2, source of 4XGU structure

Native dataset of C. elegans PCH-2, crystallized without addition of nucleotides


X-Ray Diffraction data from C. elegans HIM-3 SeMet, source of 4TRK structure

Selenomethionine SAD dataset for C. elegans HIM-3


X-Ray Diffraction data from C. elegans HIM-3, source of 4TRK structure

C. elegans HIM-3 full-length crystallized in sodium malonate