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X-Ray Diffraction data from M. musculus SYCP3 residues 105-248, source of 6DD8 structure

Data DOI: 10.15785/SBGRID/583 | ID: 583

Publication DOI: 10.7554/eLife.40372

6DD8 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Corbett Laboratory, University of California, San Diego

Release Date: Jan. 25, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/583

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/583 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/583 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/583 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/583 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 583 ; shasum -c files.sha'

Storage requirements: 5.3G

Biological Sample:

M. musculus SYCP3 residues 105-248

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24ID-C

Data Creation Date:

Aug. 1, 2017

Related Datasets:

None


Cite this Dataset

Rosenberg, SC; Corbett, KD. 2019. "X-Ray Diffraction data for: M. musculus SYCP3 residues 105-248. PDB Code 6DD8", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/583.

Download Citation

Dataset Description

Selenomethionine SAD dataset for M. musculus SYCP3 105-248, P21 crystal form

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin D CorbettDepositorUC San Diego
Scott C RosenbergData CollectorUC San Diego
Kevin CorbettPIUniversity of California, San Diego

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9793

Sweep:

SWEEP1

Files:

/programs/datagrid/583/1536_6_1_####.cbf

Images:

1 - 900

Beam:

(216.55, 223.13) -> (216.55, 223.22)

Distance:

450.0 -> 449.61

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 5.03 13.57 5.03
Low resolution limit 50.06 50.06 5.12
Completeness 97.4 100.0 98.0
Multiplicity 5.7 5.9 5.9
I/sigma 7.9 9.8 7.8
Rmerge 0.11 0.087 0.147
CC half 0.99 0.992 0.99
Anomalous completeness 95.4 100.0 96.9
Anomalous multiplicity 3.1 3.1 3.1
Cell 46.042 49.613 150.199 90.0 90.789 90.0

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9793

Sweep:

SWEEP1

Files:

/programs/datagrid/583/1536_6_1_####.cbf

Images:

1 - 900

Beam:

(216.55, 223.13) -> (216.55, 223.05)

Distance:

450.0 -> 448.97

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.36 9.12 3.36
Low resolution limit 75.09 75.11 3.42
Completeness 98.0 93.6 99.4
Multiplicity 6.5 5.7 6.9
I/sigma 13.6 20.0 6.9
Rmerge 0.086 0.058 0.298
CC half 0.995 0.995 0.971
Anomalous completeness 96.1 88.8 98.2
Anomalous multiplicity 3.5 3.5 3.5
Cell 45.79 49.37 150.2 90.0 90.8 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9793

Sweep:

SWEEP1

Files:

/programs/datagrid/583/1536_6_1_####.cbf

Images:

1 - 900

Beam:

(216.55, 223.13) -> (216.55, 223.05)

Distance:

450.0 -> 447.41

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.37 6.42 2.37
Low resolution limit 150.22 150.52 2.41
Completeness 98.5 98.8 92.6
Multiplicity 6.4 6.4 6.5
I/sigma 4.8 11.4 1.1
Rmerge 0.207 0.088 5.566
CC half 0.991 0.99 0.313
Anomalous completeness 97.3 98.3 91.4
Anomalous multiplicity 3.3 3.3 3.3
Cell 45.784 49.349 150.232 90.0 90.848 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.