X-Ray Diffraction data from M. musculus SYCP3 residues 105-248, source of 6DD9 structure

Data DOI: 10.15785/SBGRID/584 | ID: 584

Publication DOI: 10.7554/eLife.40372

6DD9 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Corbett Laboratory, University of California, San Diego

Release Date: Jan. 25, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/584

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/584 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/584 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/584 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/584 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 584 ; shasum -c files.sha'

Storage requirements: 11G

Biological Sample:

M. musculus SYCP3 residues 105-248

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24ID-C

Data Creation Date:

Aug. 23, 2017

Related Datasets:

None


Cite this Dataset

Rosenberg, SC; Corbett, KD. 2019. "X-Ray Diffraction data for: M. musculus SYCP3 residues 105-248. PDB Code 6DD9", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/584.

Download Citation

Dataset Description

Selenomethionine SAD dataset for M. musculus SYCP3 105-248, P1 crystal form

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin D CorbettDepositorUC San Diego
Scott C RosenbergData CollectorUC San Diego
Kevin CorbettPIUniversity of California, San Diego

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.92

Sweep:

SWEEP1

Files:

/programs/datagrid/584/14_8_1_####.cbf

Images:

1 - 1800

Beam:

(216.75, 223.03) -> (216.75, 223.27)

Distance:

400.0 -> 400.04

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.1 5.7 2.1
Low resolution limit 72.07 72.11 2.14
Completeness 89.2 91.6 86.7
Multiplicity 6.8 7.3 6.2
I/sigma 7.8 21.4 0.9
Rmerge 0.338 0.07 4.941
CC half 0.954 0.998 0.222
Anomalous completeness 81.9 84.6 79.1
Anomalous multiplicity 3.5 3.5 3.5
Cell 45.816 52.137 75.573 95.187 103.71 110.567

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.92

Sweep:

SWEEP1

Files:

/programs/datagrid/584/14_8_1_####.cbf

Images:

1 - 1800

Beam:

(216.75, 223.03) -> (216.75, 223.08)

Distance:

400.0 -> 399.44

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.18 5.91 2.18
Low resolution limit 32.07 32.08 2.22
Completeness 93.3 91.6 95.2
Multiplicity 7.2 6.9 7.3
I/sigma 11.1 31.2 1.0
Rmerge 0.091 0.042 1.847
CC half 0.995 0.994 0.634
Anomalous completeness 88.5 87.2 91.0
Anomalous multiplicity 3.7 3.7 3.7
Cell 45.87 52.29 75.61 95.17 103.69 110.55

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.92

Sweep:

SWEEP1

Files:

/programs/datagrid/584/14_8_1_####.cbf

Images:

1 - 1800

Beam:

(216.75, 223.03) -> (216.75, 223.08)

Distance:

400.0 -> 400.01

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.24 6.08 2.24
Low resolution limit 72.11 72.15 2.28
Completeness 92.7 90.6 94.0
Multiplicity 7.2 6.9 7.4
I/sigma 11.9 31.7 1.3
Rmerge 0.089 0.041 1.513
CC half 0.993 0.998 0.658
Anomalous completeness 87.8 86.3 88.7
Anomalous multiplicity 3.7 3.7 3.7
Cell 45.87 52.28 75.6 95.17 103.69 110.55

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.92

Sweep:

SWEEP1

Files:

/programs/datagrid/584/14_8_1_####.cbf

Images:

1 - 1800

Beam:

(216.75, 223.03) -> (216.75, 223.08)

Distance:

400.0 -> 400.54

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.01 5.47 2.01
Low resolution limit 72.32 72.37 2.05
Completeness 91.9 93.9 85.3
Multiplicity 7.2 7.6 7.1
I/sigma 4.4 10.4 0.9
Rmerge 0.562 0.105 1.772
CC half 0.659 0.952 0.534
Anomalous completeness 86.0 88.5 79.7
Anomalous multiplicity 3.7 3.7 3.7
Cell 46.062 52.505 75.831 95.099 103.772 110.492

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.