X-Ray Diffraction data from C. elegans HIM-3 bound to HTP-3 closure motif-4, source of 4TZJ structure

Data DOI: 10.15785/SBGRID/204 | ID: 204

Publication DOI: 10.1016/j.devcel.2014.09.013

4TZJ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Corbett Laboratory, University of California, San Diego

Release Date: 18 Dec 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/204

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/204 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/204 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/204 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/204 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 204 ; shasum -c files.sha'

Storage requirements: 3.5G

Biological Sample:

C. elegans HIM-3 bound to HTP-3 closure motif-4

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

SSRL beamline 12-2

Data Creation Date:

1 Jul 2013

Related Datasets:

None


Cite this Dataset

Rosenberg, SC; Corbett, KD. 2015. "X-Ray Diffraction data for: C. elegans HIM-3 bound to HTP-3 closure motif-4. PDB Code 4TZJ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/204.

Download Citation

Dataset Description

Native data for C. elegans HIM-3 bound to HTP-3 closure motif-4

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin D CorbettDepositorCorbett Lab
Scott C RosenbergData CollectorCorbett Lab
Kevin CorbettPIUniversity of California, San Diego

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9795

Sweep:

SWEEP1

Files:

/programs/datagrid/204/A2m_2_#####.cbf

Images:

1 - 600

Beam:

(217.32, 211.82) -> (217.32, 211.91)

Distance:

400.0 -> 399.68

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.11 8.44 3.11
Low resolution limit 86.45 86.48 3.16
Completeness 85.5 80.9 87.8
Multiplicity 2.4 2.5 2.4
I/sigma 5.7 8.1 2.2
Rmerge 0.107 0.124 0.297
CC half 0.937 0.927 0.81
Anomalous completeness 72.6 76.0 73.4
Anomalous multiplicity 1.3 1.3 1.3
Cell 118.63 161.271 99.902 90.0 120.316 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9795

Sweep:

SWEEP1

Files:

/programs/datagrid/204/A2m_2_#####.cbf

Images:

1 - 600

Beam:

(217.32, 211.82) -> (217.32, 211.8)

Distance:

400.0 -> 402.99

Spacegroup:

H 3 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 4.03 10.89 4.03
Low resolution limit 43.4 43.41 4.1
Completeness 93.1 90.6 93.6
Multiplicity 6.7 6.8 7.1
I/sigma 39.0 55.5 26.9
Rmerge 0.029 0.019 0.056
CC half 1.0 1.0 0.998
Anomalous completeness 92.0 93.8 94.5
Anomalous multiplicity 3.6 3.6 3.6
Cell 161.83 161.83 110.57 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9795

Sweep:

SWEEP1

Files:

/programs/datagrid/204/A2m_2_#####.cbf

Images:

1 - 600

Beam:

(217.32, 211.82) -> (217.32, 211.79)

Distance:

400.0 -> 401.14

Spacegroup:

H 3 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 4.11 11.1 4.11
Low resolution limit 43.4 43.41 4.18
Completeness 93.1 91.0 96.1
Multiplicity 6.7 6.9 7.0
I/sigma 39.5 55.6 26.9
Rmerge 0.028 0.019 0.055
CC half 1.0 1.0 0.997
Anomalous completeness 91.9 94.0 94.7
Anomalous multiplicity 3.6 3.6 3.6
Cell 161.83 161.83 110.57 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9795

Sweep:

SWEEP1

Files:

/programs/datagrid/204/A2m_2_#####.cbf

Images:

1 - 600

Beam:

(217.32, 211.82) -> (217.32, 211.79)

Distance:

400.0 -> 400.93

Spacegroup:

H 3 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.99 10.76 3.99
Low resolution limit 40.41 40.41 4.06
Completeness 93.1 90.2 94.0
Multiplicity 6.9 7.1 7.2
I/sigma 28.7 50.6 16.3
Rmerge 0.04 0.02 0.093
CC half 0.999 1.0 0.994
Anomalous completeness 92.7 94.0 94.1
Anomalous multiplicity 3.7 3.7 3.7
Cell 161.638 161.638 110.481 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.