X-Ray Diffraction data from S. cerevisiae Zip2(499-704):Spo16 complex, source of 6BZG structure

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Data DOI: 10.15785/SBGRID/540 | ID: 540

Publication DOI: 10.1101/258194

6BZG Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Corbett Laboratory, University of California, San Diego

Release Date: 6 Feb 2018

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/540

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/540 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/540 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/540 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/540 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 540 ; shasum -c files.sha'

Storage requirements: 2.5G

Biological Sample:

S. cerevisiae Zip2(499-704):Spo16 complex

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24ID-C

Data Creation Date:

15 Jun 2017

Related Datasets:

539


Cite this Dataset

Arora, K; Corbett, KD. 2018. "X-Ray Diffraction data for: S. cerevisiae Zip2(499-704):Spo16 complex. PDB Code 6BZG", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/540.

Download Citation

Dataset Description

SeMet SAD dataset, C2 crystal form

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin D CorbettDepositorCorbett Lab
Kanika AroraData CollectorCorbett Lab
Kevin CorbettPIUniversity of California, San Diego

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d /programs/datagrid//540/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii /programs/datagrid//540/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials /programs/datagrid//540/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/540/13_1_2_####.cbf

Images:

1 - 425

Beam:

(216.55, 223.13) -> (216.55, 223.21)

Distance:

450.0 -> 449.32

Spacegroup:

P 2 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.61 7.09 2.61
Low resolution limit 101.42 101.5 2.66
Completeness 95.0 91.6 97.1
Multiplicity 3.2 3.1 3.4
I/sigma 7.5 40.3 0.3
Rmerge 0.132 0.034 1.376
CC half 0.99 0.997 0.357
Anomalous completeness 84.5 88.7 88.1
Anomalous multiplicity 1.8 1.8 1.8
Cell 52.027 96.899 101.42 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.