X-Ray Diffraction data from C. elegans HIM-3, source of 4TRK structure

Data DOI: 10.15785/SBGRID/16 | ID: 16

Publication DOI: 10.1016/j.devcel.2014.09.013

4TRK Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Corbett Laboratory, University of California, San Diego

Release Date: May 5, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/16

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/16 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/16 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/16 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/16 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 16 ; shasum -c files.sha'

Storage requirements: 8.5G

Biological Sample:

C. elegans HIM-3

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

Advanced Photon Source BL 24ID-E

Data Creation Date:

March 30, 2013

Related Datasets:

17


Cite this Dataset

Rosenberg, SC; Corbett, KD. 2015. "X-Ray Diffraction data for: C. elegans HIM-3. PDB Code 4TRK", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/16.

Download Citation

Dataset Description

C. elegans HIM-3 full-length crystallized in sodium malonate

Project Members

Name Additional Roles Affiliation While Working on the Project
Scott C RosenbergData CollectorUniversity of California, San Diego
Kevin D CorbettDepositor, PIUniversity of California, San Diego

Reprocessing Instructions

Process with XDS to 1.75 Å (isotropic)

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97927

Sweep:

SWEEP1

Files:

/programs/datagrid/16/ucsd6_1_1_###.img

Images:

1 - 120

Beam:

(157.26, 160.48) -> (157.26, 159.0)

Distance:

250.0 -> 249.98

Spacegroup:

P 61

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.77 4.8 1.77
Low resolution limit 36.82 36.83 1.8
Completeness 99.6 100.0 97.1
Multiplicity 6.3 7.5 3.6
I/sigma 13.4 38.9 0.8
Rmerge 0.074 0.034 0.88
CC half 0.997 0.999 0.275
Anomalous completeness 94.7 100.0 73.3
Anomalous multiplicity 3.3 3.3 3.3
Cell 73.16 73.16 110.47 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97927

Sweep:

SWEEP1

Files:

/programs/datagrid/16/ucsd6_1_1_###.img

Images:

1 - 120

Beam:

(157.26, 160.48) -> (157.26, 159.0)

Distance:

250.0 -> 249.98

Spacegroup:

P 61

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.78 4.83 1.78
Low resolution limit 55.24 55.26 1.81
Completeness 99.7 100.0 98.1
Multiplicity 6.3 7.5 3.7
I/sigma 13.6 38.9 0.9
Rmerge 0.074 0.034 0.861
CC half 0.997 0.999 0.306
Anomalous completeness 95.2 100.0 76.0
Anomalous multiplicity 3.3 3.3 3.3
Cell 73.16 73.16 110.47 90.0 90.0 120.0

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.