Data DOI: 10.15785/SBGRID/16 | ID: 16
Publication DOI: 10.1016/j.devcel.2014.09.013
4TRK Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Corbett Laboratory, University of California, San Diego
Release Date: 5 May 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/16
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/16 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/16 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/16 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/16 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 16 ; shasum -c files.sha'
Storage requirements: 8.5G
Biological Sample:
C. elegans HIM-3
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
Advanced Photon Source BL 24ID-E
Data Creation Date:
30 Mar 2013
Related Datasets:
Rosenberg, SC; Corbett, KD. 2015. "X-Ray Diffraction data for: C. elegans HIM-3. PDB Code 4TRK", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/16.
C. elegans HIM-3 full-length crystallized in sodium malonate
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Scott C Rosenberg | Data Collector | University of California, San Diego |
| Kevin D Corbett | Depositor, PI | University of California, San Diego |
Process with XDS to 1.75 Å (isotropic)
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97927
Sweep:
SWEEP1
Files:
/programs/datagrid/16/ucsd6_1_1_###.img
Images:
1 - 120
Beam:
(157.26, 160.48) -> (157.26, 159.0)
Distance:
250.0 -> 249.98
Spacegroup:
P 61
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.73 | 4.69 | 1.73 |
| Low resolution limit | 41.63 | 41.64 | 1.76 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 7.4 | 7.5 | 6.3 |
| I/sigma | 12.8 | 40.1 | 0.9 |
| Rmerge | 0.101 | 0.034 | 1.817 |
| CC half | 0.998 | 0.999 | 0.327 |
| Anomalous completeness | 100.0 | 100.0 | 99.5 |
| Anomalous multiplicity | 3.8 | 3.8 | 3.8 |
| Cell | 73.15 | 73.15 | 110.47 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97927
Sweep:
SWEEP1
Files:
/programs/datagrid/16/ucsd6_1_1_###.img
Images:
1 - 120
Beam:
(157.26, 160.48) -> (157.26, 159.0)
Distance:
250.0 -> 249.98
Spacegroup:
P 61
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.73 | 4.7 | 1.73 |
| Low resolution limit | 55.24 | 55.26 | 1.76 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 7.4 | 7.5 | 6.3 |
| I/sigma | 12.8 | 40.0 | 0.9 |
| Rmerge | 0.101 | 0.034 | 1.821 |
| CC half | 0.998 | 0.999 | 0.33 |
| Anomalous completeness | 100.0 | 100.0 | 99.4 |
| Anomalous multiplicity | 3.8 | 3.8 | 3.8 |
| Cell | 73.15 | 73.15 | 110.47 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Reprocessing failed.
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
