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X-Ray Diffraction data from S. cerevisiae Zip2(499-704):Spo16 complex, source of 6BZG structure

Data DOI: 10.15785/SBGRID/539 | ID: 539

Publication DOI: 10.1101/258194

6BZG Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Corbett Laboratory, University of California, San Diego

Release Date: Feb. 6, 2018

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/539

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/539 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/539 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/539 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/539 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 539 ; shasum -c files.sha'

Storage requirements: 5.3G

Biological Sample:

S. cerevisiae Zip2(499-704):Spo16 complex

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24ID-C

Data Creation Date:

June 15, 2017

Related Datasets:

540


Cite this Dataset

Arora, K; Corbett, KD. 2018. "X-Ray Diffraction data for: S. cerevisiae Zip2(499-704):Spo16 complex. PDB Code 6BZG", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/539.

Download Citation

Dataset Description

Native dataset, P212121 crystal form

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin D CorbettDepositorCorbett Lab
Kanika AroraData CollectorCorbett Lab
Kevin CorbettPIUniversity of California, San Diego

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/539/14_7_1_####.cbf

Images:

1 - 900

Beam:

(216.65, 223.12) -> (216.65, 223.12)

Distance:

350.0 -> 349.9

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.23 6.05 2.23
Low resolution limit 69.72 69.75 2.27
Completeness 99.8 100.0 100.0
Multiplicity 5.6 5.3 5.8
I/sigma 3.7 6.0 1.2
Rmerge 0.234 0.156 1.676
CC half 0.956 0.977 0.262
Anomalous completeness 98.3 99.0 99.2
Anomalous multiplicity 3.0 3.0 3.0
Cell 50.347 96.209 101.177 90.0 90.0 90.0

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/539/14_7_1_####.cbf

Images:

1 - 900

Beam:

(216.65, 223.12) -> (216.65, 223.14)

Distance:

350.0 -> 349.67

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.49 9.47 3.49
Low resolution limit 96.41 96.44 3.55
Completeness 92.5 92.7 93.9
Multiplicity 3.1 3.4 3.1
I/sigma 8.8 10.4 7.3
Rmerge 0.094 0.073 0.12
CC half 0.983 0.992 0.884
Anomalous completeness 76.1 84.2 74.4
Anomalous multiplicity 1.7 1.7 1.7
Cell 50.7 101.61 96.41 90.0 90.47 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/539/14_7_1_####.cbf

Images:

1 - 900

Beam:

(216.65, 223.12) -> (216.65, 223.13)

Distance:

350.0 -> 349.24

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.22 6.01 2.22
Low resolution limit 69.96 69.99 2.25
Completeness 87.4 89.4 81.9
Multiplicity 1.9 1.9 1.8
I/sigma 2.2 3.4 0.8
Rmerge 0.344 0.246 1.747
CC half 0.625 0.587 0.113
Anomalous completeness 64.0 75.4 55.9
Anomalous multiplicity 1.1 1.1 1.1
Cell 50.364 96.463 101.571 89.978 89.778 89.905

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.