X-Ray Diffraction data from Vibrio metoecus NucC, trimer form, source of 6UXF structure

Data DOI: 10.15785/SBGRID/734 | ID: 734

6UXF Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Corbett Laboratory, University of California, San Diego

Release Date: 20 Dec 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/734

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/734 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/734 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/734 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/734 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 734 ; shasum -c files.sha'

Storage requirements: 11G

Biological Sample:

Vibrio metoecus NucC, trimer form

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

ALS Beamline 8.3.1

Data Creation Date:

23 Sep 2019

Related Datasets:

None


Cite this Dataset

Ye, Q; Corbett, KD. 2019. "X-Ray Diffraction data for: Vibrio metoecus NucC, trimer form. PDB Code 6UXF", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/734.

Download Citation

Dataset Description

Native dataset for apo trimer form of Vibrio metoecus NucC

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin D CorbettDepositorUC San Diego
Qiaozhen YeData CollectorUC San Diego
Kevin CorbettPIUniversity of California, San Diego

Reprocessing Instructions

Process to 2.15 A in space group P41212

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.11583

Sweep:

SWEEP1

Files:

/programs/datagrid/734/C3_1_#####.cbf

Images:

1 - 1800

Beam:

(215.3, 211.1) -> (215.3, 211.29)

Distance:

350.0 -> 351.8

Spacegroup:

P 43 3 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.01 5.46 2.01
Low resolution limit 71.61 71.65 2.05
Completeness 100.0 100.0 100.0
Multiplicity 75.9 67.3 67.2
I/sigma 41.0 155.4 0.8
Rmerge 0.079 0.027 6.677
CC half 1.0 1.0 0.359
Anomalous completeness 100.0 100.0 100.0
Anomalous multiplicity 41.3 41.3 41.3
Cell 124.03 124.03 124.03 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.11583

Sweep:

SWEEP1

Files:

/programs/datagrid/734/C3_1_#####.cbf

Images:

1 - 1800

Beam:

(215.3, 211.1) -> (215.3, 211.29)

Distance:

350.0 -> 351.37

Spacegroup:

P 43 3 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.02 5.48 2.02
Low resolution limit 71.6 71.65 2.06
Completeness 100.0 100.0 100.0
Multiplicity 76.1 67.5 70.7
I/sigma 41.5 155.5 0.9
Rmerge 0.078 0.027 5.831
CC half 1.0 1.0 0.405
Anomalous completeness 100.0 100.0 100.0
Anomalous multiplicity 41.4 41.4 41.4
Cell 124.02 124.02 124.02 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.11583

Sweep:

SWEEP1

Files:

/programs/datagrid/734/C3_1_#####.cbf

Images:

1 - 1800

Beam:

(215.3, 211.1) -> (215.3, 211.29)

Distance:

350.0 -> 351.06

Spacegroup:

P 41 3 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.95 5.29 1.95
Low resolution limit 123.99 124.24 1.98
Completeness 100.0 100.0 97.6
Multiplicity 73.5 67.7 51.5
I/sigma 30.4 160.9 0.3
Rmerge 0.082 0.031 6.093
CC half 1.0 1.0 0.248
Anomalous completeness 99.9 100.0 98.2
Anomalous multiplicity 39.9 39.9 39.9
Cell 123.986 123.986 123.986 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.