X-Ray Diffraction data from SARS-CoV-2 Nucleocapsid N2b domain, source of 6WZO structure

Data DOI: 10.15785/SBGRID/785 | ID: 785

6WZO Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Corbett Laboratory, University of California, San Diego

Release Date: 15 May 2020

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/785

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/785 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/785 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/785 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/785 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 785 ; shasum -c files.sha'

Storage requirements: 31G

Biological Sample:

SARS-CoV-2 Nucleocapsid N2b domain

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24ID-E

Data Creation Date:

12 May 2020

Related Datasets:

None


Cite this Dataset

Ye, Q; Corbett, KD. 2020. "X-Ray Diffraction data for: SARS-CoV-2 Nucleocapsid N2b domain. PDB Code 6WZO", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/785.

Download Citation

Dataset Description

Native dataset for SARS-CoV-2 Nucleocapsid (N) dimerization domain, P1 form

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin D CorbettDepositorUC San Diego
Qiaozhen YeData CollectorUC San Diego
Kevin CorbettPIUniversity of California, San Diego

Reprocessing Instructions

Process to 1.42 A

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/785/9_1_1_######.cbf

Images:

1 - 1800

Beam:

(164.9, 154.76) -> (164.9, 154.6)

Distance:

150.0 -> 150.41

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.09 2.96 1.09
Low resolution limit 20.77 20.78 1.11
Completeness 75.8 93.3 19.1
Multiplicity 3.7 3.5 3.8
I/sigma 9.6 30.8 0.4
Rmerge 0.036 0.026 2.299
CC half 0.999 0.998 0.249
Anomalous completeness 71.1 80.3 18.5
Anomalous multiplicity 1.9 1.9 1.9
Cell 43.72 50.08 69.35 106.51 90.09 97.14

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/785/9_1_1_######.cbf

Images:

1 - 1800

Beam:

(164.9, 154.76) -> (164.9, 154.6)

Distance:

150.0 -> 150.5

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.09 2.96 1.09
Low resolution limit 35.67 35.69 1.11
Completeness 75.7 93.3 19.1
Multiplicity 3.7 3.5 3.8
I/sigma 9.6 30.8 0.4
Rmerge 0.036 0.026 2.32
CC half 0.999 0.998 0.254
Anomalous completeness 71.1 80.2 18.5
Anomalous multiplicity 1.9 1.9 1.9
Cell 43.72 50.08 69.35 106.51 90.1 97.14

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/785/9_1_1_######.cbf

Images:

1 - 1800

Beam:

(164.9, 154.76) -> (164.9, 154.61)

Distance:

150.0 -> 150.67

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.05 2.85 1.05
Low resolution limit 66.47 66.61 1.07
Completeness 69.2 95.6 7.1
Multiplicity 3.8 3.7 3.4
I/sigma 11.1 64.7 0.1
Rmerge 0.045 0.035 3.143
CC half 0.994 0.993 0.191
Anomalous completeness 67.4 93.0 6.8
Anomalous multiplicity 1.9 1.9 1.9
Cell 43.739 50.111 69.382 106.5 90.094 97.137

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.