Data DOI: 10.15785/SBGRID/785 | ID: 785
6WZO Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Corbett Laboratory, University of California, San Diego
Release Date: May 15, 2020
1. If this dataset is locally available, it should be accessable at /programs/datagrid/785
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/785 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/785 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/785 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/785 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 785 ; shasum -c files.sha'
Storage requirements: 31G
Biological Sample:
SARS-CoV-2 Nucleocapsid N2b domain
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
APS 24ID-E
Data Creation Date:
May 12, 2020
Related Datasets:
None
Ye, Q; Corbett, KD. 2020. "X-Ray Diffraction data for: SARS-CoV-2 Nucleocapsid N2b domain. PDB Code 6WZO", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/785.
Native dataset for SARS-CoV-2 Nucleocapsid (N) dimerization domain, P1 form
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin D Corbett | Depositor | UC San Diego |
| Qiaozhen Ye | Data Collector | UC San Diego |
| Kevin Corbett | PI | University of California, San Diego |
Process to 1.42 A
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97918
Sweep:
SWEEP1
Files:
/programs/datagrid/785/9_1_1_######.cbf
Images:
1 - 1800
Beam:
(164.9, 154.76) -> (164.9, 154.6)
Distance:
150.0 -> 150.41
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.09 | 2.96 | 1.09 |
| Low resolution limit | 20.77 | 20.78 | 1.11 |
| Completeness | 75.8 | 93.3 | 19.1 |
| Multiplicity | 3.7 | 3.5 | 3.8 |
| I/sigma | 9.6 | 30.8 | 0.4 |
| Rmerge | 0.036 | 0.026 | 2.299 |
| CC half | 0.999 | 0.998 | 0.249 |
| Anomalous completeness | 71.1 | 80.3 | 18.5 |
| Anomalous multiplicity | 1.9 | 1.9 | 1.9 |
| Cell | 43.72 | 50.08 | 69.35 | 106.51 | 90.09 | 97.14 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97918
Sweep:
SWEEP1
Files:
/programs/datagrid/785/9_1_1_######.cbf
Images:
1 - 1800
Beam:
(164.9, 154.76) -> (164.9, 154.6)
Distance:
150.0 -> 150.5
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.09 | 2.96 | 1.09 |
| Low resolution limit | 35.67 | 35.69 | 1.11 |
| Completeness | 75.7 | 93.3 | 19.1 |
| Multiplicity | 3.7 | 3.5 | 3.8 |
| I/sigma | 9.6 | 30.8 | 0.4 |
| Rmerge | 0.036 | 0.026 | 2.32 |
| CC half | 0.999 | 0.998 | 0.254 |
| Anomalous completeness | 71.1 | 80.2 | 18.5 |
| Anomalous multiplicity | 1.9 | 1.9 | 1.9 |
| Cell | 43.72 | 50.08 | 69.35 | 106.51 | 90.1 | 97.14 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97918
Sweep:
SWEEP1
Files:
/programs/datagrid/785/9_1_1_######.cbf
Images:
1 - 1800
Beam:
(164.9, 154.76) -> (164.9, 154.61)
Distance:
150.0 -> 150.67
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.05 | 2.85 | 1.05 |
| Low resolution limit | 66.47 | 66.61 | 1.07 |
| Completeness | 69.2 | 95.6 | 7.1 |
| Multiplicity | 3.8 | 3.7 | 3.4 |
| I/sigma | 11.1 | 64.7 | 0.1 |
| Rmerge | 0.045 | 0.035 | 3.143 |
| CC half | 0.994 | 0.993 | 0.191 |
| Anomalous completeness | 67.4 | 93.0 | 6.8 |
| Anomalous multiplicity | 1.9 | 1.9 | 1.9 |
| Cell | 43.739 | 50.111 | 69.382 | 106.5 | 90.094 | 97.137 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
