X-Ray Diffraction data from H. sapiens TRIP13 E253Q + ATP, source of 5VQA structure

Data DOI: 10.15785/SBGRID/410 | ID: 410

5VQA Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Corbett Laboratory, University of California, San Diego

Release Date: 6 Jun 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/410

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/410 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/410 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/410 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/410 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 410 ; shasum -c files.sha'

Storage requirements: 1.6G

Biological Sample:

H. sapiens TRIP13 E253Q + ATP

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24ID-E

Data Creation Date:

19 Oct 2015

Related Datasets:

None


Cite this Dataset

Ye, Q; Corbett, KD. 2017. "X-Ray Diffraction data for: H. sapiens TRIP13 E253Q + ATP. PDB Code 5VQA", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/410.

Download Citation

Dataset Description

Native dataset for H. sapiens TRIP13 E253Q + ATP

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin D CorbettDepositorUC San Diego
Qiaozhen YeData CollectorUC San Diego
Kevin CorbettPIUniversity of California, San Diego

Reprocessing Instructions

Process to 2.54 A

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97925

Sweep:

SWEEP1

Files:

/programs/datagrid/410/13_12_1_###.img

Images:

1 - 90

Beam:

(150.51, 158.92) -> (150.51, 159.11)

Distance:

350.0 -> 349.08

Spacegroup:

P 61

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.52 6.84 2.52
Low resolution limit 60.42 60.44 2.56
Completeness 100.0 100.0 100.0
Multiplicity 5.6 5.4 5.6
I/sigma 12.9 44.4 1.1
Rmerge 0.09 0.019 1.393
CC half 0.999 1.0 0.371
Anomalous completeness 99.4 100.0 99.0
Anomalous multiplicity 2.8 2.8 2.8
Cell 98.38 98.38 120.85 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97925

Sweep:

SWEEP1

Files:

/programs/datagrid/410/13_12_1_###.img

Images:

1 - 90

Beam:

(150.51, 158.92) -> (150.51, 159.05)

Distance:

350.0 -> 349.12

Spacegroup:

P 61

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.63 7.14 2.63
Low resolution limit 85.33 85.37 2.68
Completeness 99.7 100.0 99.2
Multiplicity 5.7 5.5 5.7
I/sigma 16.8 53.8 1.0
Rmerge 0.065 0.018 1.424
CC half 0.999 0.999 0.518
Anomalous completeness 98.2 99.6 98.3
Anomalous multiplicity 2.9 2.9 2.9
Cell 98.53 98.53 121.05 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97925

Sweep:

SWEEP1

Files:

/programs/datagrid/410/13_12_1_###.img

Images:

1 - 90

Beam:

(150.51, 158.92) -> (150.51, 159.05)

Distance:

350.0 -> 349.39

Spacegroup:

P 61

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.18 8.63 3.18
Low resolution limit 85.33 85.36 3.23
Completeness 99.9 100.0 100.0
Multiplicity 5.6 5.4 5.8
I/sigma 27.3 58.4 7.4
Rmerge 0.043 0.017 0.217
CC half 0.999 0.999 0.974
Anomalous completeness 98.3 100.0 99.4
Anomalous multiplicity 2.9 2.9 2.9
Cell 98.53 98.53 121.05 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97925

Sweep:

SWEEP1

Files:

/programs/datagrid/410/13_12_1_###.img

Images:

1 - 90

Beam:

(150.51, 158.92) -> (150.51, 159.03)

Distance:

350.0 -> 349.5

Spacegroup:

P 61

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.65 7.19 2.65
Low resolution limit 60.61 60.62 2.7
Completeness 99.9 100.0 97.0
Multiplicity 5.2 5.5 2.5
I/sigma 16.0 53.9 1.0
Rmerge 0.061 0.016 0.768
CC half 0.999 1.0 0.368
Anomalous completeness 96.5 100.0 65.9
Anomalous multiplicity 2.7 2.7 2.7
Cell 98.654 98.654 121.212 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.