X-Ray Diffraction data from S. cerevisiae Hrr25:Mam1 complex, source of 5CYZ structure

Data DOI: 10.15785/SBGRID/195 | ID: 195

Publication DOI: 10.15252/embj.201694082

5CYZ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Corbett Laboratory, University of California, San Diego

Release Date: Aug. 9, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/195

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/195 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/195 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/195 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/195 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 195 ; shasum -c files.sha'

Storage requirements: 11G

Biological Sample:

S. cerevisiae Hrr25:Mam1 complex

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

Advanced Photon Source 24ID-C

Data Creation Date:

July 2, 2015

Related Datasets:

None


Cite this Dataset

Ye, Q; Corbett, KD. 2016. "X-Ray Diffraction data for: S. cerevisiae Hrr25:Mam1 complex. PDB Code 5CYZ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/195.

Download Citation

Dataset Description

Native diffraction data for S. cerevisiae Hrr25:Mam1, form 1

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin D CorbettDepositorUC San Diego & Ludwig Institute for Cancer Research
Qiaozhen YeData CollectorUC San Diego & Ludwig Institute for Cancer Research
Kevin CorbettPIUniversity of California, San Diego

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9793

Sweep:

SWEEP2

Files:

/programs/datagrid/195/13_15_2_####.cbf

Images:

1 - 900

Beam:

(216.79, 221.19) -> (216.79, 221.3)

Distance:

280.0 -> 280.8

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.84 4.99 1.84
Low resolution limit 63.94 63.98 1.87
Completeness 98.0 97.7 98.2
Multiplicity 5.2 6.4 3.2
I/sigma 8.4 19.9 1.7
Rmerge 0.12 0.06 0.789
CC half 0.995 0.996 0.428
Anomalous completeness 90.5 97.0 81.9
Anomalous multiplicity 2.8 2.8 2.8
Cell 54.15 84.004 67.495 90.0 108.686 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9793

Sweep:

SWEEP2

Files:

/programs/datagrid/195/13_15_2_####.cbf

Images:

1 - 900

Beam:

(216.79, 221.19) -> (216.79, 221.16)

Distance:

280.0 -> 278.87

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.73 4.69 1.73
Low resolution limit 41.77 41.78 1.76
Completeness 98.8 97.7 98.8
Multiplicity 5.6 6.2 3.4
I/sigma 8.9 26.5 0.8
Rmerge 0.1 0.046 1.096
CC half 0.997 0.998 0.464
Anomalous completeness 91.8 94.0 81.9
Anomalous multiplicity 2.9 2.9 2.9
Cell 54.07 83.96 67.38 90.0 108.54 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9793

Sweep:

SWEEP2

Files:

/programs/datagrid/195/13_15_2_####.cbf

Images:

1 - 900

Beam:

(216.79, 221.19) -> (216.79, 221.15)

Distance:

280.0 -> 279.04

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.74 4.72 1.74
Low resolution limit 63.88 63.93 1.77
Completeness 98.8 97.7 98.9
Multiplicity 5.6 6.2 3.5
I/sigma 9.1 26.6 0.9
Rmerge 0.1 0.046 1.041
CC half 0.997 0.998 0.443
Anomalous completeness 92.0 93.8 82.3
Anomalous multiplicity 3.0 3.0 3.0
Cell 54.07 83.96 67.38 90.0 108.54 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9793

Sweep:

SWEEP2

Files:

/programs/datagrid/195/13_15_2_####.cbf

Images:

1 - 900

Beam:

(216.79, 221.19) -> (216.79, 221.18)

Distance:

280.0 -> 279.34

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.79 4.85 1.79
Low resolution limit 51.33 51.35 1.82
Completeness 98.5 98.5 93.6
Multiplicity 5.7 6.8 3.4
I/sigma 7.7 18.1 1.5
Rmerge 0.113 0.048 0.849
CC half 0.997 0.998 0.436
Anomalous completeness 93.5 98.2 79.5
Anomalous multiplicity 3.0 3.0 3.0
Cell 54.116 83.945 67.426 90.0 108.479 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.