X-Ray Diffraction data from H. sapiens TRIP13 E253Q, source of 5VQ9 structure

Data DOI: 10.15785/SBGRID/409 | ID: 409

5VQ9 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Corbett Laboratory, University of California, San Diego

Release Date: June 6, 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/409

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/409 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/409 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/409 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/409 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 409 ; shasum -c files.sha'

Storage requirements: 3.2G

Biological Sample:

H. sapiens TRIP13 E253Q

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24ID-E

Data Creation Date:

Dec. 5, 2015

Related Datasets:

None


Cite this Dataset

Ye, Q; Corbett, KD. 2017. "X-Ray Diffraction data for: H. sapiens TRIP13 E253Q. PDB Code 5VQ9", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/409.

Download Citation

Dataset Description

Native dataset for hTRIP13 E253Q Apo state

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin D CorbettDepositorUC San Diego
Qiaozhen YeData CollectorUC San Diego
Kevin CorbettPIUniversity of California, San Diego

Reprocessing Instructions

Wedges 1 and 2 collected sequentially on the same crystal in the same orientation - can be integrated and scaled together. Wedge 2 is 30deg-120deg, Wedge 1 is 120deg-210deg.

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP2

Files:

/programs/datagrid/409/9_13_2_###.img

Images:

1 - 90

Beam:

(150.31, 158.62) -> (150.31, 158.76)

Distance:

350.0 -> 349.34

Spacegroup:

P 61

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.84 7.71 2.84
Low resolution limit 69.08 69.1 2.89
Completeness 100.0 100.0 100.0
Multiplicity 10.5 10.7 9.7
I/sigma 14.8 53.5 1.4
Rmerge 0.109 0.025 1.62
CC half 0.999 1.0 0.562
Anomalous completeness 100.0 100.0 100.0
Anomalous multiplicity 5.3 5.3 5.3
Cell 96.67 96.67 122.305 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP2

Files:

/programs/datagrid/409/9_13_2_###.img

Images:

1 - 90

Beam:

(150.31, 158.62) -> (150.31, 158.71)

Distance:

350.0 -> 349.99

Spacegroup:

P 61

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.96 8.03 2.96
Low resolution limit 69.16 69.17 3.01
Completeness 100.0 100.0 100.0
Multiplicity 7.7 10.9 5.7
I/sigma 22.7 112.8 1.1
Rmerge 0.052 0.016 1.493
CC half 1.0 1.0 0.443
Anomalous completeness 99.3 100.0 100.0
Anomalous multiplicity 4.0 4.0 4.0
Cell 96.76 96.76 122.46 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP2

Files:

/programs/datagrid/409/9_13_2_###.img

Images:

1 - 90

Beam:

(150.31, 158.62) -> (150.31, 158.7)

Distance:

350.0 -> 349.33

Spacegroup:

P 63

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.96 8.03 2.96
Low resolution limit 83.79 83.82 3.01
Completeness 99.8 100.0 100.0
Multiplicity 7.7 10.9 5.7
I/sigma 22.6 112.9 1.1
Rmerge 0.053 0.016 1.587
CC half 0.999 1.0 0.475
Anomalous completeness 99.4 100.0 99.4
Anomalous multiplicity 3.9 3.9 3.9
Cell 96.75 96.75 122.46 90.0 90.0 120.0

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.