Data DOI: 10.15785/SBGRID/409 | ID: 409
5VQ9 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Corbett Laboratory, University of California, San Diego
Release Date: 6 Jun 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/409
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/409 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/409 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/409 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/409 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 409 ; shasum -c files.sha'
Storage requirements: 3.2G
Biological Sample:
H. sapiens TRIP13 E253Q
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
APS 24ID-E
Data Creation Date:
5 Dec 2015
Related Datasets:
None
Ye, Q; Corbett, KD. 2017. "X-Ray Diffraction data for: H. sapiens TRIP13 E253Q. PDB Code 5VQ9", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/409.
Native dataset for hTRIP13 E253Q Apo state
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin D Corbett | Depositor | UC San Diego |
| Qiaozhen Ye | Data Collector | UC San Diego |
| Kevin Corbett | PI | University of California, San Diego |
Wedges 1 and 2 collected sequentially on the same crystal in the same orientation - can be integrated and scaled together. Wedge 2 is 30deg-120deg, Wedge 1 is 120deg-210deg.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9792
Sweep:
SWEEP2
Files:
/programs/datagrid/409/9_13_2_###.img
Images:
1 - 90
Beam:
(150.31, 158.62) -> (150.31, 158.71)
Distance:
350.0 -> 349.98
Spacegroup:
P 61
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.83 | 7.68 | 2.83 |
| Low resolution limit | 83.79 | 83.82 | 2.88 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 11.2 | 10.9 | 10.0 |
| I/sigma | 20.8 | 102.0 | 1.0 |
| Rmerge | 0.085 | 0.018 | 2.473 |
| CC half | 1.0 | 1.0 | 0.421 |
| Anomalous completeness | 100.0 | 100.0 | 99.6 |
| Anomalous multiplicity | 5.7 | 5.7 | 5.7 |
| Cell | 96.75 | 96.75 | 122.46 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9792
Sweep:
SWEEP2
Files:
/programs/datagrid/409/9_13_2_###.img
Images:
1 - 90
Beam:
(150.31, 158.62) -> (150.31, 158.7)
Distance:
350.0 -> 349.37
Spacegroup:
P 61
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.82 | 7.65 | 2.82 |
| Low resolution limit | 83.79 | 83.82 | 2.87 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 11.2 | 10.9 | 10.1 |
| I/sigma | 20.6 | 102.4 | 0.9 |
| Rmerge | 0.086 | 0.018 | 2.725 |
| CC half | 1.0 | 1.0 | 0.412 |
| Anomalous completeness | 100.0 | 100.0 | 100.0 |
| Anomalous multiplicity | 5.7 | 5.7 | 5.7 |
| Cell | 96.75 | 96.75 | 122.45 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9792
Sweep:
SWEEP2
Files:
/programs/datagrid/409/9_13_2_###.img
Images:
1 - 90
Beam:
(150.31, 158.62) -> (150.31, 158.69)
Distance:
350.0 -> 349.92
Spacegroup:
P 6
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.3 | 6.25 | 2.3 |
| Low resolution limit | 122.7 | 122.88 | 2.34 |
| Completeness | 100.0 | 99.9 | 100.0 |
| Multiplicity | 9.8 | 10.9 | 6.3 |
| I/sigma | 8.9 | 50.6 | 2.4 |
| Rmerge | 0.143 | 0.031 | 0.198 |
| CC half | 0.949 | 0.996 | 0.466 |
| Anomalous completeness | 100.0 | 99.9 | 99.7 |
| Anomalous multiplicity | 5.0 | 5.0 | 5.0 |
| Cell | 96.981 | 96.981 | 122.704 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
