X-Ray Diffraction data from Rhizobiales Pch2, source of 6PB3 structure

Data DOI: 10.15785/SBGRID/681 | ID: 681

6PB3 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Corbett Laboratory, University of California, San Diego

Release Date: Dec. 20, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/681

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/681 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/681 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/681 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/681 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 681 ; shasum -c files.sha'

Storage requirements: 16G

Biological Sample:

Rhizobiales Pch2

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24ID-E

Data Creation Date:

Nov. 11, 2018

Related Datasets:

None


Cite this Dataset

Ye, Q; Corbett, KD. 2019. "X-Ray Diffraction data for: Rhizobiales Pch2. PDB Code 6PB3", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/681.

Download Citation

Dataset Description

SAD dataset with selenomethionine-derivatized protein. One chain in AU; P6 symmetry reconstructs homo-hexamer

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin D CorbettDepositorUC San Diego
Qiaozhen YeData CollectorUC San Diego
Kevin CorbettPIUniversity of California, San Diego

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/681/14_16_1_######.cbf

Images:

1 - 900

Beam:

(164.11, 154.41) -> (164.11, 154.47)

Distance:

300.0 -> 299.61

Spacegroup:

P 6

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.97 5.34 1.97
Low resolution limit 43.47 43.48 2.0
Completeness 98.9 98.8 95.5
Multiplicity 10.5 9.8 10.5
I/sigma 16.4 54.3 0.6
Rmerge 0.051 0.027 2.936
CC half 0.999 0.999 0.349
Anomalous completeness 98.5 96.8 95.7
Anomalous multiplicity 5.4 5.4 5.4
Cell 100.39 100.39 48.83 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/681/14_16_1_######.cbf

Images:

1 - 900

Beam:

(164.11, 154.41) -> (164.11, 154.46)

Distance:

300.0 -> 299.77

Spacegroup:

P 6

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.97 5.35 1.97
Low resolution limit 86.94 87.03 2.0
Completeness 98.9 98.7 95.5
Multiplicity 10.5 9.8 10.5
I/sigma 16.4 54.3 0.6
Rmerge 0.051 0.027 2.941
CC half 0.999 0.999 0.336
Anomalous completeness 98.5 96.4 95.7
Anomalous multiplicity 5.4 5.4 5.4
Cell 100.39 100.39 48.83 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/681/14_16_1_######.cbf

Images:

1 - 900

Beam:

(164.11, 154.41) -> (164.11, 154.46)

Distance:

300.0 -> 298.7

Spacegroup:

P 6

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.92 5.22 1.92
Low resolution limit 86.47 86.56 1.96
Completeness 97.9 98.9 82.1
Multiplicity 10.5 10.0 9.5
I/sigma 11.7 69.2 0.1
Rmerge 0.065 0.026 2.776
CC half 0.999 1.0 0.28
Anomalous completeness 97.9 97.0 85.4
Anomalous multiplicity 5.4 5.4 5.4
Cell 99.844 99.844 48.574 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.