X-Ray Diffraction data from SARS-CoV-2 N protein RNA-binding domain bound to single-domain antibody C2, source of 7N0R structure

Data DOI: 10.15785/SBGRID/836 | ID: 836

Publication DOI: 10.3389/fimmu.2021.719037

7N0R Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Corbett Laboratory, University of California, San Diego

Release Date: Feb. 8, 2022

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/836

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/836 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/836 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/836 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/836 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 836 ; shasum -c files.sha'

Storage requirements: 31G

Biological Sample:

SARS-CoV-2 N protein RNA-binding domain bound to single-domain antibody C2

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS Beamline 24ID-E

Data Creation Date:

Feb. 11, 2021

Related Datasets:

None


Cite this Dataset

Ye, Q; Corbett, KD. 2022. "X-Ray Diffraction data for: SARS-CoV-2 N protein RNA-binding domain bound to single-domain antibody C2. PDB Code 7N0R", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/836.

Download Citation

Dataset Description

Process to 1.42 A

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin D CorbettDepositorUC San Diego
Qiaozhen YeData CollectorUC San Diego
Kevin CorbettPIUniversity of California, San Diego

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/836/12_3_1_######.cbf

Images:

1 - 1800

Beam:

(164.86, 154.33) -> (164.86, 154.42)

Distance:

170.0 -> 170.67

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.1 2.99 1.1
Low resolution limit 40.69 40.71 1.12
Completeness 76.7 99.3 6.4
Multiplicity 6.3 6.6 2.9
I/sigma 16.4 46.1 0.6
Rmerge 0.037 0.027 1.073
CC half 0.999 0.999 0.616
Anomalous completeness 75.5 97.9 5.5
Anomalous multiplicity 3.2 3.2 3.2
Cell 46.66 77.11 71.92 90.0 95.14 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/836/12_3_1_######.cbf

Images:

1 - 1800

Beam:

(164.86, 154.33) -> (164.86, 154.42)

Distance:

170.0 -> 170.62

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.1 2.99 1.1
Low resolution limit 40.69 40.71 1.12
Completeness 76.7 99.3 6.4
Multiplicity 6.3 6.6 2.9
I/sigma 16.5 46.1 0.6
Rmerge 0.037 0.027 1.073
CC half 0.999 0.999 0.616
Anomalous completeness 75.5 97.9 5.5
Anomalous multiplicity 3.2 3.2 3.2
Cell 46.66 77.11 71.92 90.0 95.14 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/836/12_3_1_######.cbf

Images:

1 - 1800

Beam:

(164.86, 154.33) -> (164.86, 154.43)

Distance:

170.0 -> 170.61

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.1 3.0 1.1
Low resolution limit 52.44 52.5 1.12
Completeness 76.1 99.7 5.4
Multiplicity 6.3 6.8 2.7
I/sigma 14.3 88.1 0.2
Rmerge 0.042 0.028 0.753
CC half 0.999 0.999 0.64
Anomalous completeness 75.0 99.7 4.3
Anomalous multiplicity 3.2 3.2 3.2
Cell 46.64 77.06 71.868 90.0 95.14 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.