X-Ray Diffraction data from C. elegans PCH-2 SeMet, source of 4XGU structure

Data DOI: 10.15785/SBGRID/21 | ID: 21

Publication DOI: 10.7554/eLife.07367

4XGU Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Corbett Laboratory, University of California, San Diego

Release Date: 6 May 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/21

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/21 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/21 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/21 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/21 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 21 ; shasum -c files.sha'

Storage requirements: 3.2G

Biological Sample:

C. elegans PCH-2 SeMet

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

Advanced Photon Source BL 24ID-E

Data Creation Date:

5 Dec 2013

Related Datasets:

20


Cite this Dataset

Ye, Q; Corbett, KD. 2015. "X-Ray Diffraction data for: C. elegans PCH-2 SeMet. PDB Code 4XGU", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/21.

Download Citation

Dataset Description

Selenomethionine dataset for C. elegans PCH-2

Project Members

Name Additional Roles Affiliation While Working on the Project
Qiaozhen YeData CollectorUniversity of California, San Diego
Kevin D CorbettDepositor, PIUniversity of California, San Diego

Reprocessing Instructions

Process with XDS to 3.23 Å with anomalous flags ON

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97921

Sweep:

SWEEP1

Files:

/programs/datagrid/21/ucsd_11_2_1_###.img

Images:

1 - 180

Beam:

(152.27, 158.67) -> (152.27, 158.79)

Distance:

450.0 -> 450.05

Spacegroup:

C 2 2 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.97 8.06 2.97
Low resolution limit 99.09 99.14 3.02
Completeness 100.0 99.7 99.9
Multiplicity 7.1 6.3 6.6
I/sigma 7.0 27.1 0.9
Rmerge 0.223 0.044 1.929
CC half 0.995 0.997 0.195
Anomalous completeness 99.9 99.4 99.1
Anomalous multiplicity 3.7 3.7 3.7
Cell 126.255 239.832 198.177 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97921

Sweep:

SWEEP1

Files:

/programs/datagrid/21/ucsd_11_2_1_###.img

Images:

1 - 180

Beam:

(152.27, 158.67) -> (152.27, 158.75)

Distance:

450.0 -> 448.75

Spacegroup:

C 2 2 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.77 10.23 3.77
Low resolution limit 99.07 99.1 3.84
Completeness 99.9 99.3 100.0
Multiplicity 7.4 6.7 7.6
I/sigma 13.7 33.7 4.1
Rmerge 0.087 0.037 0.427
CC half 0.998 0.998 0.971
Anomalous completeness 99.8 98.8 99.9
Anomalous multiplicity 3.9 3.9 3.9
Cell 126.07 239.45 198.13 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97921

Sweep:

SWEEP1

Files:

/programs/datagrid/21/ucsd_11_2_1_###.img

Images:

1 - 180

Beam:

(152.27, 158.67) -> (152.27, 158.76)

Distance:

450.0 -> 449.22

Spacegroup:

C 2 2 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.28 8.9 3.28
Low resolution limit 99.07 99.11 3.34
Completeness 99.8 99.4 99.8
Multiplicity 7.4 6.8 7.6
I/sigma 9.8 32.9 1.1
Rmerge 0.124 0.038 1.664
CC half 0.997 0.997 0.667
Anomalous completeness 99.7 99.0 99.6
Anomalous multiplicity 3.9 3.9 3.9
Cell 126.07 239.45 198.13 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97921

Sweep:

SWEEP1

Files:

/programs/datagrid/21/ucsd_11_2_1_###.img

Images:

1 - 180

Beam:

(152.27, 158.67) -> (152.27, 158.74)

Distance:

450.0 -> 447.09

Spacegroup:

C 2 2 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.2 8.67 3.2
Low resolution limit 96.72 96.77 3.25
Completeness 99.7 99.7 93.2
Multiplicity 7.2 6.9 7.5
I/sigma 8.4 30.0 1.2
Rmerge 0.133 0.04 1.586
CC half 0.997 0.997 0.668
Anomalous completeness 99.6 99.6 93.2
Anomalous multiplicity 3.7 3.7 3.7
Cell 125.458 238.277 197.087 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.