Data DOI: 10.15785/SBGRID/359 | ID: 359
5SZC Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Corbett Laboratory, University of California, San Diego
Release Date: Sept. 5, 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/359
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/359 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/359 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/359 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/359 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 359 ; shasum -c files.sha'
Storage requirements: 5.3G
Biological Sample:
Human Dpf3 double-PHD domain bound to histone H3 tail peptide with monomethylated K4/acetylated K14
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
SSRL Beamline 9-2
Data Creation Date:
June 14, 2016
Related Datasets:
None
Local, A; Ren, B; Shiau, AK; Singh, N; Corbett, KD. 2017. "X-Ray Diffraction data for: Human Dpf3 double-PHD domain bound to histone H3 tail peptide with monomethylated K4/acetylated K14. PDB Code 5SZC", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/359.
Native data for PDB entry 5SZC
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin D Corbett | Depositor | University of California, San Diego and Ludwig Institute for Cancer Research |
| Andrea Local | University of California, San Diego and Ludwig Institute for Cancer Research | |
| Bing Ren | University of California, San Diego and Ludwig Institute for Cancer Research | |
| Andrew K Shiau | Ludwig Institute for Cancer Research | |
| Namit Singh | Data Collector | University of California, San Diego and Ludwig Institute for Cancer Research |
| Kevin Corbett | PI | University of California, San Diego |
Process to 1.2 A with XDS, Space group P4(3)2(1)2
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97946
Sweep:
SWEEP1
Files:
/programs/datagrid/359/DPF3_2349_1_#####.cbf
Images:
1 - 900
Beam:
(217.32, 211.82) -> (217.32, 211.42)
Distance:
200.0 -> 199.15
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.05 | 2.85 | 1.05 |
| Low resolution limit | 37.15 | 37.17 | 1.07 |
| Completeness | 89.2 | 100.0 | 34.2 |
| Multiplicity | 10.5 | 11.5 | 3.4 |
| I/sigma | 31.4 | 81.6 | 0.8 |
| Rmerge | 0.03 | 0.02 | 1.309 |
| CC half | 1.0 | 1.0 | 0.36 |
| Anomalous completeness | 86.6 | 98.9 | 24.4 |
| Anomalous multiplicity | 5.7 | 5.7 | 5.7 |
| Cell | 39.62 | 39.62 | 148.58 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97946
Sweep:
SWEEP1
Files:
/programs/datagrid/359/DPF3_2349_1_#####.cbf
Images:
1 - 900
Beam:
(217.32, 211.82) -> (217.32, 211.43)
Distance:
200.0 -> 199.3
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.1 | 2.99 | 1.1 |
| Low resolution limit | 39.63 | 39.66 | 1.12 |
| Completeness | 95.0 | 100.0 | 61.5 |
| Multiplicity | 10.4 | 11.4 | 4.7 |
| I/sigma | 11.9 | 28.1 | 0.9 |
| Rmerge | 0.08 | 0.046 | 0.598 |
| CC half | 0.998 | 0.998 | 0.815 |
| Anomalous completeness | 93.7 | 99.9 | 54.9 |
| Anomalous multiplicity | 5.6 | 5.6 | 5.6 |
| Cell | 39.63 | 39.63 | 148.662 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
