X-Ray Diffraction data from E. coli MS115-1 CdnC, ATP-bound (Selenomethionine), source of 6P80 structure

Data DOI: 10.15785/SBGRID/669 | ID: 669

6P80 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Corbett Laboratory, University of California, San Diego

Release Date: 20 Dec 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/669

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/669 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/669 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/669 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/669 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 669 ; shasum -c files.sha'

Storage requirements: 8.5G

Biological Sample:

E. coli MS115-1 CdnC, ATP-bound (Selenomethionine)

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24ID-E

Data Creation Date:

19 Apr 2017

Related Datasets:

668


Cite this Dataset

Ye, Q; Corbett, KD. 2019. "X-Ray Diffraction data for: E. coli MS115-1 CdnC, ATP-bound (Selenomethionine). PDB Code 6P80", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/669.

Download Citation

Dataset Description

Single-wavelength selenomethionine anomalous dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin D CorbettDepositorUC San Diego
Qiaozhen YeData CollectorUC San Diego
Kevin CorbettPIUniversity of California, San Diego

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/669/LICR_2_1_1_######.cbf

Images:

1 - 500

Beam:

(163.68, 154.85) -> (163.68, 154.89)

Distance:

275.0 -> 276.33

Spacegroup:

P 31 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.87 5.07 1.87
Low resolution limit 39.95 39.96 1.9
Completeness 100.0 100.0 100.0
Multiplicity 5.6 5.1 5.6
I/sigma 16.0 52.9 0.7
Rmerge 0.043 0.018 2.309
CC half 0.999 0.999 0.335
Anomalous completeness 98.5 96.7 98.8
Anomalous multiplicity 3.0 3.0 3.0
Cell 76.29 76.29 100.32 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/669/LICR_2_1_1_######.cbf

Images:

1 - 500

Beam:

(163.68, 154.85) -> (163.68, 154.89)

Distance:

275.0 -> 275.54

Spacegroup:

P 31 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.91 5.18 1.91
Low resolution limit 50.11 50.13 1.94
Completeness 100.0 100.0 100.0
Multiplicity 5.5 5.0 5.8
I/sigma 12.0 36.3 0.7
Rmerge 0.061 0.029 2.615
CC half 0.998 0.998 0.365
Anomalous completeness 98.5 96.1 99.6
Anomalous multiplicity 2.9 2.9 2.9
Cell 76.24 76.24 100.22 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/669/LICR_2_1_1_######.cbf

Images:

1 - 500

Beam:

(163.68, 154.85) -> (163.68, 154.9)

Distance:

275.0 -> 275.2

Spacegroup:

P 31 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.8 4.88 1.8
Low resolution limit 66.09 66.14 1.83
Completeness 100.0 100.0 98.7
Multiplicity 5.5 5.2 4.3
I/sigma 13.3 58.9 0.2
Rmerge 0.056 0.029 2.202
CC half 0.999 0.999 0.373
Anomalous completeness 99.4 98.2 96.4
Anomalous multiplicity 2.9 2.9 2.9
Cell 76.317 76.317 100.374 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.