X-Ray Diffraction data from Csm1-Ulp2-Tof2 complex, source of 53VN structure

Data DOI: 10.15785/SBGRID/398 | ID: 398

Publication DOI: 10.1101/gad.296145.117

53VN Coordinates: Viewer, PDB, MMDB

Corbett Laboratory, University of California, San Diego

Release Date: 9 May 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/398

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/398 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/398 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/398 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/398 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 398 ; shasum -c files.sha'

Storage requirements: 4.7G

Biological Sample:

Csm1-Ulp2-Tof2 complex

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24ID-C

Data Creation Date:

28 Nov 2016

Related Datasets:

None


Cite this Dataset

Singh, N; Corbett, KD. 2017. "X-Ray Diffraction data for: Csm1-Ulp2-Tof2 complex. PDB Code 53VN", SBGrid Data Bank, V1, http://dx.doi.org/10.15785/SBGRID/398.

Download Citation

Dataset Description

Native dates for Csm1 bound to Ulp2-Tof2 fusion

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin D CorbettDepositorUC San Diego
Namit SinghData CollectorUC San Diego
Kevin CorbettPIUniversity of California, San Diego

Reprocessing Instructions

Process using XDS to 1.3 A

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9791

Sweep:

SWEEP1

Files:

/programs/datagrid/398/UCSD8_8_1_####.cbf

Images:

1 - 800

Beam:

(216.87, 223.15) -> (216.87, 223.29)

Distance:

200.0 -> 200.03

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.44 3.91 1.44
Low resolution limit 35.13 35.14 1.46
Completeness 95.0 95.0 95.0
Multiplicity 3.3 3.3 3.3
I/sigma 6.2 6.2 6.2
Rmerge 0.088 0.088 0.088
CC half 0.985 0.985 0.985
Anomalous completeness 83.4 83.4 83.4
Anomalous multiplicity 1.8 1.8 1.8
Cell 72.135 57.049 41.093 90.0 121.242 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9791

Sweep:

SWEEP1

Files:

/programs/datagrid/398/UCSD8_8_1_####.cbf

Images:

1 - 800

Beam:

(216.87, 223.15) -> (216.87, 223.1)

Distance:

200.0 -> 199.3

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.34 3.63 1.34
Low resolution limit 22.11 22.11 1.36
Completeness 95.0 95.0 95.0
Multiplicity 3.6 3.6 3.6
I/sigma 11.6 11.6 11.6
Rmerge 0.043 0.043 0.043
CC half 0.996 0.996 0.996
Anomalous completeness 83.9 83.9 83.9
Anomalous multiplicity 2.0 2.0 2.0
Cell 71.66 56.92 40.98 90.0 121.06 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9791

Sweep:

SWEEP1

Files:

/programs/datagrid/398/UCSD8_8_1_####.cbf

Images:

1 - 800

Beam:

(216.87, 223.15) -> (216.87, 223.08)

Distance:

200.0 -> 199.72

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.44 3.91 1.44
Low resolution limit 35.1 35.12 1.46
Completeness 95.9 95.9 95.9
Multiplicity 3.7 3.7 3.7
I/sigma 6.9 6.9 6.9
Rmerge 0.053 0.053 0.053
CC half 0.996 0.996 0.996
Anomalous completeness 86.2 86.2 86.2
Anomalous multiplicity 2.0 2.0 2.0
Cell 40.98 56.92 61.51 90.0 93.74 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9791

Sweep:

SWEEP1

Files:

/programs/datagrid/398/UCSD8_8_1_####.cbf

Images:

1 - 800

Beam:

(216.87, 223.15) -> (216.87, 223.1)

Distance:

200.0 -> 199.84

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.5 4.07 1.5
Low resolution limit 41.72 41.73 1.53
Completeness 88.4 88.4 88.4
Multiplicity 2.1 2.1 2.1
I/sigma 8.1 8.1 8.1
Rmerge 0.041 0.041 0.041
CC half 0.988 0.988 0.988
Anomalous completeness 68.3 68.3 68.3
Anomalous multiplicity 1.2 1.2 1.2
Cell 40.991 45.743 45.768 76.932 66.16 66.138


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.