X-Ray Diffraction data from C. glabrata Csm1:S. cerevisiae Dsn1(71-110) complex, source of 6MJE structure

Data DOI: 10.15785/SBGRID/610 | ID: 610

6MJE Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Corbett Laboratory, University of California, San Diego

Release Date: Oct. 30, 2018

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/610

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/610 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/610 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/610 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/610 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 610 ; shasum -c files.sha'

Storage requirements: 8.5G

Biological Sample:

C. glabrata Csm1:S. cerevisiae Dsn1(71-110) complex

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

SSRL Beamline 14-1

Data Creation Date:

April 15, 2016

Related Datasets:

None


Cite this Dataset

Singh, N; Corbett, KD.. 2018. "X-Ray Diffraction data for: C. glabrata Csm1:S. cerevisiae Dsn1(71-110) complex. PDB Code 6MJE", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/610.

Download Citation

Dataset Description

Native dataset for C. glabrata Csm1:S. cerevisiae Dsn1(71-110) complex

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin D. CorbettDepositorUC San Diego
Namit SinghData CollectorUC San Diego
Kevin CorbettPIUniversity of California, San Diego

Reprocessing Instructions

Process to 2.5 A in space group P21 (this will process in higher symmetry, but final refined Rfree values are significantly higher in these space groups

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.12709

Sweep:

SWEEP1

Files:

/programs/datagrid/610/LD5_12_#####.mccd

Images:

1 - 270

Beam:

(162.5, 162.5) -> (162.5, 162.41)

Distance:

250.0 -> 249.92

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.41 6.54 2.41
Low resolution limit 50.83 50.84 2.45
Completeness 100.0 100.0 100.0
Multiplicity 19.4 16.1 19.4
I/sigma 7.7 19.3 1.3
Rmerge 1.21 0.088 144.4
CC half 0.945 0.999 0.829
Anomalous completeness 100.0 100.0 100.0
Anomalous multiplicity 11.1 11.1 11.1
Cell 44.253 44.253 203.32 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.12709

Sweep:

SWEEP1

Files:

/programs/datagrid/610/LD5_12_#####.mccd

Images:

1 - 270

Beam:

(162.5, 162.5) -> (162.5, 162.27)

Distance:

250.0 -> 249.2

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.61 7.08 2.61
Low resolution limit 44.24 44.25 2.66
Completeness 98.3 100.0 92.8
Multiplicity 19.6 14.7 21.9
I/sigma 15.0 37.9 1.2
Rmerge 0.221 0.059 3.945
CC half 0.997 0.996 0.752
Anomalous completeness 97.6 99.4 93.6
Anomalous multiplicity 11.3 11.3 11.3
Cell 44.24 44.24 203.27 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.12709

Sweep:

SWEEP1

Files:

/programs/datagrid/610/LD5_12_#####.mccd

Images:

1 - 270

Beam:

(162.5, 162.5) -> (162.5, 162.25)

Distance:

250.0 -> 249.5

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.55 6.91 2.55
Low resolution limit 44.24 44.25 2.59
Completeness 97.9 100.0 92.3
Multiplicity 19.7 14.9 21.5
I/sigma 14.1 37.3 0.8
Rmerge 0.232 0.06 5.817
CC half 0.998 0.998 0.493
Anomalous completeness 97.2 99.5 92.5
Anomalous multiplicity 11.4 11.4 11.4
Cell 44.24 44.24 203.28 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.12709

Sweep:

SWEEP1

Files:

/programs/datagrid/610/LD5_12_#####.mccd

Images:

1 - 270

Beam:

(162.5, 162.5) -> (162.5, 162.36)

Distance:

250.0 -> 248.35

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.66 7.22 2.66
Low resolution limit 50.63 50.64 2.71
Completeness 100.0 100.0 100.0
Multiplicity 19.9 15.9 21.0
I/sigma 8.4 17.9 1.7
Rmerge 0.495 0.085 27.349
CC half 0.998 0.998 0.978
Anomalous completeness 100.0 100.0 100.0
Anomalous multiplicity 11.6 11.6 11.6
Cell 44.083 44.083 202.535 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.