X-Ray Diffraction data from Candida albicans Ras1 guanine-nucleotide exchange factor, source of 7NZZ structure
Data DOI: 10.15785/SBGRID/859 | PDB ID 7NZZ: RCSB PDBe | Published: July 25, 2023
Pereira Laboratory, IBMC/i3S, Universidade do Porto
native dataset, P4222 crystal form
Data DOI: 10.15785/SBGRID/858 | PDB ID 7R85: RCSB PDBe | Published: Nov. 9, 2021
Garcia Laboratory, Stanford University
native dataset, P21 crystal form
Data DOI: 10.15785/SBGRID/857 | PDB ID 7R84: RCSB PDBe | Published: Nov. 9, 2021
Garcia Laboratory, Stanford University
native dataset
Data DOI: 10.15785/SBGRID/856 | PDB ID 7R86: RCSB PDBe | Published: Nov. 9, 2021
Garcia Laboratory, Stanford University
native data set
Data DOI: 10.15785/SBGRID/855 | PDB ID 1YQ2: RCSB PDBe | Publication DOI: 10.1016/j.jmb.2005.08.028 | Published: Oct. 29, 2021
Dohnalek Laboratory, Institute of Biotechnology of the Czech Academy of Sciences
Native data
Data DOI: 10.15785/SBGRID/854 | PDB ID 7S47: RCSB PDBe | Published: Nov. 18, 2022
Boggon Laboratory, Yale University School of Medicine
Native data
Data DOI: 10.15785/SBGRID/853 | PDB ID 7S48: RCSB PDBe | Published: Nov. 18, 2022
Boggon Laboratory, Yale University School of Medicine
Native datasets
Data DOI: 10.15785/SBGRID/852 | PDB ID 7S46: RCSB PDBe | Published: Nov. 18, 2022
Boggon Laboratory, Yale University School of Medicine
native dataset
Data DOI: 10.15785/SBGRID/850 | PDB ID 7S2S: RCSB PDBe | Published: March 25, 2022
Garcia Laboratory, Stanford University
native dataset
Data DOI: 10.15785/SBGRID/849 | PDB ID 7S2R: RCSB PDBe | Published: March 25, 2022
Garcia Laboratory, Stanford University
Structural model of the E3BP core, refined in a C2 symmetrized cryoEM map. E3BP showed a minimal fold, which is conserved, and can be found in various other E2 proteins from diverse acyl-transferases, including the 2-keto acid dehydrogenase family. Additionally, by fitting the structural models into an asymmetrically refined cryoEM map, we supply a structural model for the native core scaffold of the PDHc metabolon from C. thermophilum. Models were built and refined by COOT and PHENIX. To capture the transient interaction of lipoyl domain (LD) and the core structure during the transacetylase reaction, we docked the LDs of C. thermophilum, H. sapiens, and N. crassa to their respective core structure. HADDOCK parameter files are deposited to reproduce docking. The best docking solution of C. thermophilum was used to study the interaction by extensive MD simulations. Parameter files and results are also given, to reproduce these simulations.
Data DOI: 10.15785/SBGRID/848 | PDB ID 7OTT: RCSB PDBe | Published: Nov. 23, 2021
Kastritis Laboratory, Martin Luther University Halle-Wittenberg
Human thrombin:tsetse thrombin inhibitor complex, source of 7PHX structure
Data DOI: 10.15785/SBGRID/846 | PDB ID 7PHX: RCSB PDBe | Published: Sept. 28, 2021
Pereira Laboratory, IBMC/i3S, Universidade do Porto
Apo PTP1B by Native S-SAD at Room Temperature
Data DOI: 10.15785/SBGRID/845 | PDB ID 7RIN: RCSB PDBe | Published: Aug. 31, 2021
Hekstra Laboratory, Harvard University
Collected at APS on beamline LS-Cat D. 0-360 degrees rotation one degree frames. MARR 300 CCD.
Data DOI: 10.15785/SBGRID/844 | PDB ID 7R7J: RCSB PDBe | Published: April 1, 2022
Keck Laboratory, University of Wisconsin-Madison
HADDOCK refined 3D structures from multiple datasets (BM5, MANY, DC, CAPRI), used for experiments in the DeepRank paper. 1.Renaud, N. et al. DeepRank: A deep learning framework for data mining 3D protein-protein interfaces. bioRxiv 2021.01.29.425727 (2021) doi:10.1101/2021.01.29.425727.
Data DOI: 10.15785/SBGRID/843 | Published: Oct. 28, 2021
Xue Laboratory, Radboud University Medical Center
MicroED data of tetragonal lysozyme collected from specimens prepared by Vitrobot and Preassis.
Data DOI: 10.15785/SBGRID/842 | Published: July 9, 2021
Zou Laboratory, Stockholm University
native dataset
Data DOI: 10.15785/SBGRID/838 | PDB ID 7N3T: RCSB PDBe | Published: April 12, 2022
Garcia Laboratory, Stanford University
Native dataset
Data DOI: 10.15785/SBGRID/837 | PDB ID 7R98: RCSB PDBe | Publication DOI: 10.3389/fimmu.2021.719037 | Published: Feb. 8, 2022
Corbett Laboratory, University of California, San Diego
Process to 1.42 A
Data DOI: 10.15785/SBGRID/836 | PDB ID 7N0R: RCSB PDBe | Publication DOI: 10.3389/fimmu.2021.719037 | Published: Feb. 8, 2022
Corbett Laboratory, University of California, San Diego
Native dataset
Data DOI: 10.15785/SBGRID/835 | PDB ID 7N0I: RCSB PDBe | Publication DOI: 10.3389/fimmu.2021.719037 | Published: Feb. 8, 2022
Corbett Laboratory, University of California, San Diego