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X-Ray Diffraction data from PAK4cat (D440N/S474E) in complex with Integrin beta5 760-770 peptide, source of 7S46 structure

Data DOI: 10.15785/SBGRID/852 | ID: 852

Publication DOI: 10.1038/s42003-022-04157-3

7S46 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Boggon Laboratory, Yale University School of Medicine

Release Date: Nov. 18, 2022

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/852

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/852 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/852 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/852 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/852 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 852 ; shasum -c files.sha'

Storage requirements: 6.1G

Biological Sample:

PAK4cat (D440N/S474E) in complex with Integrin beta5 760-770 peptide

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24-ID-E

Data Creation Date:

March 30, 2017

Related Datasets:

None


Cite this Dataset

Ha, B; Boggon, TJ. 2022. "X-Ray Diffraction data for: PAK4cat (D440N/S474E) in complex with Integrin beta5 760-770 peptide. PDB Code 7S46", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/852.

Download Citation

Dataset Description

Native datasets

Project Members

Name Additional Roles Affiliation While Working on the Project
Titus J BoggonDepositorYale University
Byung Hak HaData CollectorYale University
Titus BoggonPIYale University School of Medicine

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/852/TJB1P10_1_######.cbf

Images:

1 - 360

Beam:

(163.74, 154.88) -> (163.74, 154.86)

Distance:

250.0 -> 249.92

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.06 5.59 2.06
Low resolution limit 59.58 59.6 2.1
Completeness 100.0 100.0 100.0
Multiplicity 12.8 11.0 12.7
I/sigma 14.6 45.1 0.9
Rmerge 0.095 0.032 3.271
CC half 0.999 1.0 0.306
Anomalous completeness 100.0 100.0 100.0
Anomalous multiplicity 7.0 7.0 7.0
Cell 61.8 61.8 178.74 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/852/TJB1P10_1_######.cbf

Images:

1 - 360

Beam:

(163.74, 154.88) -> (163.74, 154.86)

Distance:

250.0 -> 249.76

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.08 5.64 2.08
Low resolution limit 59.58 59.6 2.12
Completeness 100.0 100.0 100.0
Multiplicity 12.8 11.0 12.3
I/sigma 15.0 45.3 1.0
Rmerge 0.093 0.032 2.865
CC half 0.999 1.0 0.364
Anomalous completeness 100.0 100.0 100.0
Anomalous multiplicity 7.0 7.0 7.0
Cell 61.8 61.8 178.74 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/852/TJB1P10_1_######.cbf

Images:

1 - 360

Beam:

(163.74, 154.88) -> (163.74, 154.86)

Distance:

250.0 -> 248.69

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.93 5.24 1.93
Low resolution limit 61.49 61.52 1.96
Completeness 100.0 100.0 99.8
Multiplicity 13.0 11.5 13.3
I/sigma 8.6 44.4 0.2
Rmerge 0.12 0.042 3.305
CC half 0.999 1.0 0.282
Anomalous completeness 100.0 100.0 99.8
Anomalous multiplicity 7.1 7.1 7.1
Cell 61.491 61.491 177.893 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.