PDBs, scores and RMSDs related with ClustENM-HADDOCK modelling pipeline for protein-protein and protein-DNA complexes
Data DOI: 10.15785/SBGRID/707 | Published: Sept. 27, 2019
Bonvin Laboratory, Utrecht University
X-ray data diffraction
Data DOI: 10.15785/SBGRID/704 | PDB ID 6E84: RCSB PDBe | Publication DOI: 10.1016/j.chembiol.2019.04.012 | Published: Aug. 20, 2019
Ferré-D'Amaré Laboratory, National Institutes of Health
X ray data
Data DOI: 10.15785/SBGRID/703 | PDB ID 6E82: RCSB PDBe | Publication DOI: 10.1016/j.chembiol.2019.04.012 | Published: Aug. 20, 2019
Ferré-D'Amaré Laboratory, National Institutes of Health
X-ray diffraction data
Data DOI: 10.15785/SBGRID/702 | PDB ID 6E81: RCSB PDBe | Publication DOI: 10.1016/j.chembiol.2019.04.012 | Published: Aug. 20, 2019
Ferré-D'Amaré Laboratory, National Institutes of Health
X-ray diffraction data collected at ALS
Data DOI: 10.15785/SBGRID/701 | PDB ID 6E80: RCSB PDBe | Publication DOI: 10.1016/j.chembiol.2019.04.012 | Published: Aug. 20, 2019
Ferré-D'Amaré Laboratory, National Institutes of Health
Native data. 3 passes.
Data DOI: 10.15785/SBGRID/699 | PDB ID 6PXC: RCSB PDBe | Published: Dec. 17, 2019
Boggon Laboratory, Yale University School of Medicine
Native data. 2 passes.
Data DOI: 10.15785/SBGRID/698 | PDB ID 6PXB: RCSB PDBe | Published: Dec. 17, 2019
Boggon Laboratory, Yale University School of Medicine
iodide + magic triangle soaking, SAD data set (@1.5418 angstroms wavelength) These data were used to refine the structure (but not for structure solution, for which a separate data set was used, and deposited under #694)
Data DOI: 10.15785/SBGRID/695 | PDB ID 6NQZ: RCSB PDBe | Published: March 13, 2020
Buschiazzo Laboratory, Institut Pasteur de Montevideo
iodide + magic triangle soaking, SAD data set (@1.5418 angstroms wavelength) These data were used to solve the structure by direct methods using the iodine atoms as anomalous scatterers (but not for final refinement, for which a separate data set has been used and deposited)
Data DOI: 10.15785/SBGRID/694 | PDB ID 6NQZ: RCSB PDBe | Published: March 13, 2020
Buschiazzo Laboratory, Institut Pasteur de Montevideo
native data set (hexagonal P622 form of FcpA from L. biflexa)
Data DOI: 10.15785/SBGRID/693 | PDB ID 6NQW: RCSB PDBe | Published: March 13, 2020
Buschiazzo Laboratory, Institut Pasteur de Montevideo
Iodine quick-soak - SAD data set (monoclinic C2 form of FcpA from L. biflexa)
Data DOI: 10.15785/SBGRID/692 | PDB ID 6NQY: RCSB PDBe | Published: March 13, 2020
Buschiazzo Laboratory, Institut Pasteur de Montevideo
Native data set (monoclinic form of FcpA from L. biflexa)
Data DOI: 10.15785/SBGRID/691 | PDB ID 6NQX: RCSB PDBe | Published: March 13, 2020
Buschiazzo Laboratory, Institut Pasteur de Montevideo
Native dataset
Data DOI: 10.15785/SBGRID/689 | PDB ID 6ONB: RCSB PDBe | Publication DOI: 10.1073/pnas.1818631116 | Published: Dec. 6, 2019
Ozkan Laboratory, University of Chicago
Native dataset
Data DOI: 10.15785/SBGRID/688 | PDB ID 6ON9: RCSB PDBe | Publication DOI: 10.1073/pnas.1818631116 | Published: Dec. 6, 2019
Ozkan Laboratory, University of Chicago
Native dataset
Data DOI: 10.15785/SBGRID/687 | PDB ID 6ON6: RCSB PDBe | Publication DOI: 10.1073/pnas.1818631116 | Published: Dec. 6, 2019
Ozkan Laboratory, University of Chicago
Antibody-antigen docking models gathered for the article: "Modelling of antibody-antigen complexes by information-driven docking." F. Ambrosetti, B. Jimenez-Garcia, J. Roel-Touris, A.M.J.J. Bonvin. Jun 2019. Structure.
Data DOI: 10.15785/SBGRID/686 | Published: Sept. 27, 2019
Bonvin Laboratory, Utrecht University
HADDOCK docking models for Protein-Protein Docking Benchmark 4; HADDOCK, pyDock, SwarmDock and ZDock docking models for new complexes of Docking Benchmark 5; Various docking models for CAPRI score_set. All of the non-HADDOCK models are refined with HADDOCK using energy minimisation.
Data DOI: 10.15785/SBGRID/684 | Publication DOI: 10.1093/bioinformatics/btz496 | Published: July 9, 2019
Bonvin Laboratory, Utrecht University
native data set
Data DOI: 10.15785/SBGRID/683 | PDB ID 5CY2: RCSB PDBe | Published: June 18, 2019
Rice Laboratory, University of Chicago
native data set
Data DOI: 10.15785/SBGRID/682 | PDB ID 5CY1: RCSB PDBe | Published: June 18, 2019
Rice Laboratory, University of Chicago
SAD dataset with selenomethionine-derivatized protein. One chain in AU; P6 symmetry reconstructs homo-hexamer
Data DOI: 10.15785/SBGRID/681 | PDB ID 6PB3: RCSB PDBe | Published: Dec. 20, 2019
Corbett Laboratory, University of California, San Diego