X-Ray Diffraction data from Beta-galactosidase from Arthrobacter sp. C2-2, source of 1YQ2 structure

Data DOI: 10.15785/SBGRID/855 | ID: 855

Publication DOI: 10.1016/j.jmb.2005.08.028

1YQ2 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Dohnalek Laboratory, Institute of Biotechnology of the Czech Academy of Sciences

Release Date: Oct. 29, 2021

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/855

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/855 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/855 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/855 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/855 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 855 ; shasum -c files.sha'

Storage requirements: 15G

Biological Sample:

Beta-galactosidase from Arthrobacter sp. C2-2

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

ESRF ID29

Data Creation Date:

Sept. 12, 2003

Related Datasets:

None


Cite this Dataset

Skalova, T; Duskova, J; Hasek, J; Kralova, B; Lipovova, P; Petrokova, H; Spiwok, V; Strnad, H; Vondrackova, E; Dohnalek, J. 2021. "X-Ray Diffraction data for: Beta-galactosidase from Arthrobacter sp. C2-2. PDB Code 1YQ2", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/855.

Download Citation

Dataset Description

native data set

Project Members

Name Additional Roles Affiliation While Working on the Project
Tereza SkalovaData Collector, DepositorInstitute of Macromolecular Chemistry, Academy of Sciences of the Czech Republic, Heyrovskeho nam. 2, 162 06 Praha 6, Czech Republic
Jan DohnalekData CollectorInstitute of Macromolecular Chemistry, Academy of Sciences of the Czech Republic, Heyrovskeho nam. 2, 162 06 Praha 6, Czech Republic
Jarmila DuskovaData CollectorInstitute of Macromolecular Chemistry, Academy of Sciences of the Czech Republic, Heyrovskeho nam. 2, 162 06 Praha 6, Czech Republic
Jindrich HasekData CollectorInstitute of Macromolecular Chemistry, Academy of Sciences of the Czech Republic, Heyrovskeho nam. 2, 162 06 Praha 6, Czech Republic
Blanka KralovaData CollectorInstitute of Chemical Technology, Technicka 5, 166 28 Praha 6, Czech Republic
Petra LipovovaData CollectorInstitute of Chemical Technology, Technicka 5, 166 28 Praha 6, Czech Republic
Hana PetrokovaData CollectorInstitute of Macromolecular Chemistry, Academy of Sciences of the Czech Republic, Heyrovskeho nam. 2, 162 06 Praha 6, Czech Republic
Vojtech SpiwokData CollectorInstitute of Chemical Technology, Technicka 5, 166 28 Praha 6, Czech Republic
Hynek StrnadData CollectorInstitute of Molecular Genetics, Flemingovo nam. 2, 166 37 Praha 6, Czech Republic
Eva VondrackovaData CollectorInstitute of Macromolecular Chemistry, Academy of Sciences of the Czech Republic, Heyrovskeho nam. 2, 162 06 Praha 6, Czech Republic
Jan DohnalekPIInstitute of Biotechnology of the Czech Academy of Sciences

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9168

Sweep:

SWEEP2

Files:

/programs/datagrid/855/galeg20b2_3_####.img

Images:

1000 - 1800

Beam:

(106.7, 103.2) -> (106.7, 103.59)

Distance:

184.97 -> 184.47

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.64 4.45 1.64
Low resolution limit 63.99 64.04 1.67
Completeness 91.1 97.6 58.2
Multiplicity 3.3 3.7 1.6
I/sigma 7.3 18.8 0.8
Rmerge 0.088 0.044 0.7
CC half 0.994 0.993 0.325
Anomalous completeness 78.9 91.3 31.3
Anomalous multiplicity 1.8 1.8 1.8
Cell 140.05 205.49 140.37 90.0 102.38 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9168

Sweep:

SWEEP2

Files:

/programs/datagrid/855/galeg20b2_3_####.img

Images:

1000 - 1800

Beam:

(106.7, 103.2) -> (106.7, 103.59)

Distance:

184.97 -> 185.26

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.64 4.45 1.64
Low resolution limit 66.78 66.84 1.67
Completeness 91.1 97.6 58.1
Multiplicity 3.3 3.7 1.6
I/sigma 7.3 18.8 0.8
Rmerge 0.088 0.044 0.7
CC half 0.994 0.993 0.326
Anomalous completeness 78.9 91.3 31.3
Anomalous multiplicity 1.8 1.8 1.8
Cell 140.05 205.49 140.37 90.0 102.38 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9168

Sweep:

SWEEP2

Files:

/programs/datagrid/855/galeg20b2_3_####.img

Images:

1000 - 1800

Beam:

(106.7, 103.2) -> (106.7, 103.59)

Distance:

184.97 -> 185.05

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.63 4.42 1.63
Low resolution limit 68.42 68.48 1.66
Completeness 95.1 99.9 64.1
Multiplicity 3.6 3.8 2.3
I/sigma 3.7 25.1 0.1
Rmerge 0.124 0.057 7.221
CC half 0.991 0.994 0.039
Anomalous completeness 91.3 99.3 48.8
Anomalous multiplicity 1.8 1.8 1.8
Cell 140.139 205.718 140.5 90.0 102.429 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.