Data DOI: 10.15785/SBGRID/838 | ID: 838
Publication DOI: 10.1038/s41586-022-04654-9
7N3T Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Garcia Laboratory, Stanford University
Release Date: 12 Apr 2022
1. If this dataset is locally available, it should be accessable at /programs/datagrid/838
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/838 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/838 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/838 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/838 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 838 ; shasum -c files.sha'
Storage requirements: 11G
Biological Sample:
TrkA ECD complex with designed miniprotein ligand
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
SSRL beamline 12-2
Data Creation Date:
28 Feb 2020
Related Datasets:
None
Jude, KM; Garcia, KC; Garcia, K. 2022. "X-Ray Diffraction data for: TrkA ECD complex with designed miniprotein ligand. PDB Code 7N3T", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/838.
native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin M Jude | Data Collector, Depositor | HHMI/Stanford University |
| K C Garcia | HHMI/Stanford University | |
| K. Christopher Garcia | PI | Stanford University |
XDS
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.03317
Sweep:
SWEEP1
Files:
/programs/datagrid/838/1450-10_8_#####.cbf
Images:
1 - 1800
Beam:
(217.32, 211.82) -> (217.32, 211.98)
Distance:
350.0 -> 344.79
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.99 | 5.4 | 1.99 |
| Low resolution limit | 40.26 | 40.27 | 2.02 |
| Completeness | 98.7 | 99.2 | 99.2 |
| Multiplicity | 6.9 | 6.9 | 6.9 |
| I/sigma | 8.5 | 29.3 | 0.9 |
| Rmerge | 0.154 | 0.044 | 2.218 |
| CC half | 0.996 | 0.999 | 0.345 |
| Anomalous completeness | 97.8 | 98.2 | 98.7 |
| Anomalous multiplicity | 3.5 | 3.5 | 3.5 |
| Cell | 42.17 | 205.51 | 72.507 | 90.0 | 106.418 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.03317
Sweep:
SWEEP1
Files:
/programs/datagrid/838/1450-10_8_#####.cbf
Images:
1 - 1800
Beam:
(217.32, 211.82) -> (217.32, 211.95)
Distance:
350.0 -> 352.39
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.99 | 5.4 | 1.99 |
| Low resolution limit | 51.37 | 51.39 | 2.02 |
| Completeness | 98.7 | 99.2 | 99.2 |
| Multiplicity | 6.9 | 6.9 | 6.9 |
| I/sigma | 8.5 | 29.3 | 0.9 |
| Rmerge | 0.154 | 0.044 | 2.229 |
| CC half | 0.997 | 0.999 | 0.322 |
| Anomalous completeness | 97.8 | 98.2 | 98.7 |
| Anomalous multiplicity | 3.5 | 3.5 | 3.5 |
| Cell | 42.16 | 205.49 | 72.496 | 90.0 | 106.415 | 90.0 |
|---|
Version:
version unreported
Reprocessing failed.
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
