X-Ray Diffraction data from TrkA ECD complex with designed miniprotein ligand, source of 7N3T structure

Data DOI: 10.15785/SBGRID/838 | ID: 838

Publication DOI: 10.1038/s41586-022-04654-9

7N3T Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Garcia Laboratory, Stanford University

Release Date: April 12, 2022

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/838

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/838 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/838 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/838 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/838 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 838 ; shasum -c files.sha'

Storage requirements: 11G

Biological Sample:

TrkA ECD complex with designed miniprotein ligand

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

SSRL beamline 12-2

Data Creation Date:

Feb. 28, 2020

Related Datasets:

None


Cite this Dataset

Jude, KM; Garcia, KC; Garcia, K. 2022. "X-Ray Diffraction data for: TrkA ECD complex with designed miniprotein ligand. PDB Code 7N3T", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/838.

Download Citation

Dataset Description

native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin M JudeData Collector, DepositorHHMI/Stanford University
K C GarciaHHMI/Stanford University
K. Christopher GarciaPIStanford University

Reprocessing Instructions

XDS

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.03317

Sweep:

SWEEP1

Files:

/programs/datagrid/838/1450-10_8_#####.cbf

Images:

1 - 1800

Beam:

(217.32, 211.82) -> (217.32, 211.98)

Distance:

350.0 -> 345.87

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.99 5.4 1.99
Low resolution limit 40.44 40.45 2.02
Completeness 98.7 99.2 99.2
Multiplicity 6.9 6.9 6.9
I/sigma 8.5 29.3 0.9
Rmerge 0.154 0.044 2.226
CC half 0.997 0.998 0.343
Anomalous completeness 97.8 98.1 98.7
Anomalous multiplicity 3.5 3.5 3.5
Cell 42.16 205.5 72.496 90.0 106.415 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.03317

Sweep:

SWEEP1

Files:

/programs/datagrid/838/1450-10_8_#####.cbf

Images:

1 - 1800

Beam:

(217.32, 211.82) -> (217.32, 212.01)

Distance:

350.0 -> 349.14

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.99 5.4 1.99
Low resolution limit 41.32 41.33 2.02
Completeness 98.7 99.2 99.2
Multiplicity 6.9 6.9 6.9
I/sigma 8.5 29.3 0.9
Rmerge 0.154 0.044 2.239
CC half 0.997 0.999 0.325
Anomalous completeness 97.8 98.3 98.7
Anomalous multiplicity 3.5 3.5 3.5
Cell 42.16 205.48 72.49 90.0 106.42 90.0

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.