X-Ray Diffraction data from Bai1 TSR3 domain, source of 7R84 structure

Data DOI: 10.15785/SBGRID/857 | ID: 857

Publication DOI: 10.1016/j.cell.2021.10.016

7R84 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Garcia Laboratory, Stanford University

Release Date: 9 Nov 2021

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/857

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/857 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/857 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/857 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/857 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 857 ; shasum -c files.sha'

Storage requirements: 11G

Biological Sample:

Bai1 TSR3 domain

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

SSRL beamline 12-2

Data Creation Date:

8 Apr 2019

Related Datasets:

None


Cite this Dataset

Jude, KM; Garcia, KC; Miao, Y; Garcia, K. 2021. "X-Ray Diffraction data for: Bai1 TSR3 domain. PDB Code 7R84", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/857.

Download Citation

Dataset Description

native dataset, P21 crystal form

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin M JudeData Collector, DepositorHHMI/Stanford University
K C GarciaHHMI/Stanford University
Yi MiaoStanford University
K. Christopher GarciaPIStanford University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/857/1720-3_1_#####.cbf

Images:

1 - 1800

Beam:

(217.32, 211.82) -> (217.32, 212.08)

Distance:

250.0 -> 253.47

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.26 3.42 1.26
Low resolution limit 30.4 30.41 1.28
Completeness 88.9 97.3 45.3
Multiplicity 6.3 6.4 4.5
I/sigma 11.6 28.4 0.9
Rmerge 0.063 0.047 1.601
CC half 0.999 0.998 0.305
Anomalous completeness 86.7 95.2 43.2
Anomalous multiplicity 3.3 3.3 3.3
Cell 40.58 60.8 44.43 90.0 109.67 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/857/1720-3_1_#####.cbf

Images:

1 - 1800

Beam:

(217.32, 211.82) -> (217.32, 212.02)

Distance:

250.0 -> 251.6

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.26 3.42 1.26
Low resolution limit 38.21 38.23 1.28
Completeness 88.9 97.2 45.3
Multiplicity 6.3 6.5 4.5
I/sigma 11.5 28.3 0.9
Rmerge 0.063 0.047 1.657
CC half 0.999 0.998 0.297
Anomalous completeness 86.8 95.2 43.2
Anomalous multiplicity 3.3 3.3 3.3
Cell 40.58 60.8 44.43 90.0 109.67 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/857/1720-3_1_#####.cbf

Images:

1 - 1800

Beam:

(217.32, 211.82) -> (217.32, 212.03)

Distance:

250.0 -> 250.73

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.25 3.4 1.25
Low resolution limit 41.85 41.88 1.27
Completeness 87.7 98.0 42.5
Multiplicity 6.4 6.8 4.5
I/sigma 3.8 30.3 0.1
Rmerge 0.099 0.068 1.522
CC half 0.997 0.996 0.011
Anomalous completeness 86.8 98.4 41.3
Anomalous multiplicity 3.3 3.3 3.3
Cell 40.585 60.852 44.45 90.0 109.678 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.