X-Ray Diffraction data from PAK4cat in complex with Integrin beta5 760-770 peptide, source of 7S48 structure

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Data DOI: 10.15785/SBGRID/853 | ID: 853

Publication DOI: 10.1038/s42003-022-04157-3

7S48 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Boggon Laboratory, Yale University School of Medicine

Release Date: 18 Nov 2022

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/853

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/853 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/853 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/853 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/853 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 853 ; shasum -c files.sha'

Storage requirements: 13G

Biological Sample:

PAK4cat in complex with Integrin beta5 760-770 peptide

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24-ID-E

Data Creation Date:

30 Mar 2017

Related Datasets:

None


Cite this Dataset

Ha, B; Boggon, TJ. 2022. "X-Ray Diffraction data for: PAK4cat in complex with Integrin beta5 760-770 peptide. PDB Code 7S48", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/853.

Download Citation

Dataset Description

Native data

Project Members

Name Additional Roles Affiliation While Working on the Project
Titus J BoggonDepositorYale University
Byung Hak HaData CollectorYale University
Titus BoggonPIYale University School of Medicine

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d /programs/datagrid//853/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii /programs/datagrid//853/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials /programs/datagrid//853/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP2

Files:

/programs/datagrid/853/TJB2P05_2_######.cbf

Images:

1 - 360

Beam:

(163.29, 154.36) -> (163.29, 154.41)

Distance:

270.0 -> 269.3

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.81 4.92 1.81
Low resolution limit 61.44 61.48 1.84
Completeness 99.7 100.0 94.6
Multiplicity 12.6 11.4 12.6
I/sigma 6.2 32.8 0.1
Rmerge 0.513 0.089 49.285
CC half 0.998 0.998 0.089
Anomalous completeness 99.6 99.7 95.0
Anomalous multiplicity 6.6 6.6 6.6
Cell 61.445 61.397 179.672 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.