Maintance Notification for 2020 July 24

The SBDB will be operating at a reduced level due to underlying network maintenance, starting July 24. New dataset registrations, deposition credential requests, dataset uploads, and dataset downloads from HMS will be unavailable during this time. Local access and downloads from other DAA sites will be unaffected. We expect to return to full operations July 25 or earlier.

X-Ray Diffraction data from Chicken egg white lysozyme, source of 6RT9 structure

Orthorhombic crystals grown with 300g/L sucrose


X-Ray Diffraction data from Chicken egg white lysozyme, source of 6RT3 structure

High resolution pass


X-Ray Diffraction data from Chicken egg white lysozyme, source of 6RT3 structure

Low resolution pass


X-Ray Diffraction data from Chicken egg white lysozyme, source of 6RT1 structure

Highly redundant dataset from Cu Ka home source


X-Ray Diffraction data from horse liver alcohol dehydrogease E L57F with NAD and trifluoroethanol, source of 6OA7 structure

high and low resolution passes to 1.1 A resolution


X-Ray Diffraction data from Fab bound to IL-4/IL-4Ra/gammaC complex, source of 6OEL structure

native data set


HADDOCK models of mutant protein complexes

HADDOCK models of mutant protein complexes gathered for the article: "C. Geng, A. Vangone, G.E. Folkers, L.C. Xue and A.M.J.J. Bonvin. iSEE: Interface Structure, Evolution and Energy-based machine learning predictor of binding affinity changes upon mutations. Proteins: Struc. Funct. & Bioinformatics 87, 110-119 (2019)."


X-Ray Diffraction data from Hose liver alcohol dehydrogenase L57F substitution, NAD + pentafluorobenzyl alcohol, source of 6O91 structure

High resolution pass ("_1.????") at 120 mm, 0.25 deg oscillations, 360 deg total and low resolution pass ("_2.????) at 200 mm with 0.5 deg oscillations over 360 deg total.


X-Ray Diffraction data from FasR transcription factor from Mycobacterium tuberculosis in complex with DNA, source of 6O6P structure

Native dataset ; low resolution, but best data so far with these orthorhombic crystals


X-Ray Diffraction data from FasR transcription factor from Mycobacterium tuberculosis, source of 6O6O structure

Native data; the protein was not co-crystallized or soaked with any ligand, but turned out to contain myristic acid bound, coming from the expression system


X-Ray Diffraction data from FasR transcription factor from Mycobacterium tuberculosis in complex with C20-CoA, source of 6O6N structure

Native data, phased ab-initio using Arcimboldo


X-Ray Diffraction data from D. melanogaster Dpr10 IG1 bound to DIP-alpha IG1, source of 6NRQ structure

Native dataset


X-Ray Diffraction data from D. melanogaster DIP-eta IG1 homodimer, source of 6NRX structure

Native dataset


X-Ray Diffraction data from D. melanogaster DIP-gamma IG1+IG2, source of 6NS1 structure

native dataset


X-Ray Diffraction data from D. melanogaster Dpr1 IG1 bound to DIP-eta IG1, source of 6NRW structure

Native dataset


X-Ray Diffraction data from D. melanogaster Dpr11 IG1 bound to DIP-gamma IG1+IG2, source of 6NRR structure

Native dataset


X-Ray Diffraction data from Mycobacterial glucosylglycerate hydrolase, source of 6Q5T structure

X-Ray Diffraction data from M. hassiacum GgH, source of 6Q5T structure


X-Ray Diffraction data from protein, source of 6NMW structure

Complete data set from a single crystal for Lyn kinase SH3 domain


X-Ray Diffraction data from Designed repeat binding protein with Frizzled-4 CRD, source of 6NE1 structure

Native Dataset


X-Ray Diffraction data from Designed repeat binding protein with Frizzled-8 CRD, source of 6NDZ structure

Merged datasets for structure solution by MR