X-Ray Diffraction data from nanobody complex with IL2Rg, source of 7S2R structure

Data DOI: 10.15785/SBGRID/849 | ID: 849

Publication DOI: 10.1016/j.cell.2022.02.025

7S2R Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Garcia Laboratory, Stanford University

Release Date: March 25, 2022

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/849

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/849 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/849 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/849 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/849 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 849 ; shasum -c files.sha'

Storage requirements: 31G

Biological Sample:

nanobody complex with IL2Rg

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

SSRL beamline 12-1

Data Creation Date:

May 1, 2018

Related Datasets:

None


Cite this Dataset

Jude, KM; Garcia, KC; Glassman, CR; Garcia, K. 2022. "X-Ray Diffraction data for: nanobody complex with IL2Rg. PDB Code 7S2R", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/849.

Download Citation

Dataset Description

native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin M JudeData Collector, DepositorHHMI/Stanford University
K C GarciaHHMI/Stanford University
Caleb R GlassmanStanford University
K. Christopher GarciaPIStanford University

Reprocessing Instructions

data processed with XDS

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/849/C1_3_#####.cbf

Images:

1 - 1800

Beam:

(163.95, 155.66) -> (163.95, 155.69)

Distance:

350.01 -> 352.17

Spacegroup:

I 41 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.45 6.64 2.45
Low resolution limit 36.0 36.0 2.49
Completeness 99.9 100.0 99.8
Multiplicity 27.0 24.3 28.1
I/sigma 4.3 11.3 0.4
Rmerge 0.47 0.232 9.043
CC half 0.959 0.982 0.281
Anomalous completeness 99.7 100.0 99.6
Anomalous multiplicity 14.3 14.3 14.3
Cell 119.52 119.52 236.47 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/849/C1_3_#####.cbf

Images:

1 - 1800

Beam:

(163.95, 155.66) -> (163.95, 155.66)

Distance:

350.01 -> 353.82

Spacegroup:

I 41 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.49 6.75 2.49
Low resolution limit 48.44 48.45 2.53
Completeness 99.9 100.0 100.0
Multiplicity 26.9 24.1 28.2
I/sigma 4.6 11.5 0.4
Rmerge 0.459 0.231 9.336
CC half 0.957 0.98 0.318
Anomalous completeness 99.7 100.0 99.9
Anomalous multiplicity 14.3 14.3 14.3
Cell 119.51 119.51 236.45 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/849/C1_3_#####.cbf

Images:

1 - 1800

Beam:

(163.95, 155.66) -> (163.95, 155.7)

Distance:

350.01 -> 351.65

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.54 6.89 2.54
Low resolution limit 59.92 59.93 2.58
Completeness 98.3 98.2 99.1
Multiplicity 6.9 6.7 7.0
I/sigma 1.3 9.4 0.0
Rmerge 0.477 0.215 8.002
CC half 0.909 0.971 0.235
Anomalous completeness 97.9 98.1 98.7
Anomalous multiplicity 3.5 3.5 3.5
Cell 168.82 236.013 119.259 90.0 134.928 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.