Maintance Thur 2026 Nov 12

The SBDB will be undergoing infrastructure maintance Thur 2026 Nov 12 between 10AM and 6PM ET. Dataset registrations, dataset depositions, and dataset downloads from the primary location will be unavailable; API access will also be impacted.




Datasets from the Harvard University



X-Ray Diffraction data from high-resolution ambient temperature structure of lysozyme soaked with sodium iodide, source of 9B7C structure

3 passes of 1440 raw diffraction images modeled by PDB ID 9B7C.

X-Ray Diffraction data from Hen egg-white lysozyme (HEWL), source of structure

A series of 3049 pink-beam, polychromatic still images spaced one degree between adjacent frames. Metadata: Detector distance: 200 mm Beam center: (176.22 mm, 174.68 mm) Peak wavelength: 1.05 Angstroms Bandwidth: 5.5% (BioCARS) Unit cell constants: 79.405, 79.405, 37.837, 90.00, 90.00, 90.00 Space group: P43212

X-Ray Diffraction data from E. coli dihydrofolate reductase bound to NADP+ and folate, source of structure

A series of 180 pink-beam, polychromatic still images spaced one degree between adjacent images. Metadata: Detector distance: 200 mm Beam center: (176.00 mm, 173.93 mm) Peak wavelength: 1.05 Angstroms Beam spectral bandwidth: 5.5% (BioCARS) Unit cell: 34.297, 45.552, 99.035, 90, 90, 90 Space group: P212121

X-Ray Diffraction data from Second PDZ domain of Ligand of Numb protein X 2 (human), source of 5E11 structure

Time-resolved data consisting of four passes of pink still images for PDZ2. Passes C, D, and E are spaced two degrees between adjacent images, with pass F spaced one degree between adjacent images. Start angles are 0, 92, 181, and 361.5 degrees for passes C, D, E, and F respectively. Time points are collected at 0, 50, 100, and 200 nanoseconds per image per pass. Metadata: Detector distance: 200 mm Beam center: (175.76 mm, 154.17 mm) Peak wavelength: 1.04 Angstroms Beam spectral bandwidth: 5.5% (BioCARS) Unit cell: 65.3, 39.45, 39.01, 90, 117.54, 90 Space group: C121 Applied voltage: 6.01 kV

X-Ray Diffraction data from Cadmium-bound WT Nramp/MntH divalent transition metal transporter from Deinococcus radiodurans, source of 8E6M structure

High resolution dataset collected from a single WT LCP crystal soaked in precipitant having cadmium.

X-Ray Diffraction data from Mn-bound D296A mutant Nramp/MntH divalent transition metal transporter from Deinococcus radiodurans, source of 8E6L structure

Datasets of Mn-bound D296A was collected from 3 LCP crystals. Image files that start C7run1_17 are from the first crystal, C7run2_19 are from the second crystal and C7run4_20 are from the third crystal.

X-Ray Diffraction data from Mn-bound M230A mutant Nramp/MntH divalent transition metal transporter from Deinococcus radiodurans, source of 8E6I structure

High resolution datasets of Mn-bound M230A mutant collected from 3 separate LCP crystals. Image files that start A131_run2 are from the first crystal, A132_run3 are from the second crystal and A133_run5 are from the third crystal.

X-Ray Diffraction data from Mn-bound A47W mutant Nramp/MntH divalent transition metal transporter from Deinococcus radiodurans, source of 8E6H structure

High resolution dataset of Mn-bound A47W mutant collected from a single LCP crystal

X-Ray Diffraction data from Manganese-bound WT Nramp/MntH divalent transition metal transporter from Deinococcus radiodurans, source of 8E60 structure

High resolution dataset of a single LCP crystal of WT soaked in precipitant containing manganese

X-Ray Diffraction data from WTsoak Nramp/MntH divalent transition metal transporter from Deinococcus radiodurans, source of 8E5V structure

High resolution dataset of a single LCP crystal of WT mock-soaked in precipitant

X-Ray Diffraction data from WT Nramp/MntH divalent transition metal transporter from Deinococcus radiodurans, source of 8E5S structure

High resolution dataset of WT protein obtained from single LCP crystal

X-Ray Diffraction data from Protein tyrosine phosphatase 1B, source of 7RIN structure

Apo PTP1B by Native S-SAD at Room Temperature

X-Ray Diffraction data from Protein tyrosine phosphatase 1B, source of 7MM1 structure

PTP1B in complex with TCS401 by Native S-SAD at Room Temperature

X-Ray Diffraction data from S95A ClbP bound to monoolein, source of 7MDE structure

Data collected at the selenium edge of a single crystal of selenomethionine-substituted ClbP grown in a monoolein mesophase.

X-Ray Diffraction data from Wildtype ClbP inhibited by hexanoyl-D-asparagine boronic acid, source of 7MDC structure

Data collected from a single crystal of the wildtype ClbP peptidase covalently inhibited by a boronic acid and grown in a monopalmitolein mesophase.

X-Ray Diffraction data from S95A ClbP bound to acyl-D-asparagine product analog, source of 7MDF structure

Bromine edge data collected from two crystals of the ClbP peptidase grown in presence of a substrate analog and in a monopalmitolein mesophase.

X-Ray Diffraction data from Dihydrofolate reductase, source of 7LVC structure

E. coli DHFR by Native Mn,P,S-SAD at Room Temperature

X-Ray Diffraction data from Hen Egg White Lysozyme, source of 7L84 structure

Hen Egg White Lysozyme by Native S-SAD at Room Temperature

X-Ray Diffraction data from NS1-inhibitor-bound human nicotinamide N-methyl transferase, source of 6ORR structure

native data set; best data set collected; contained multiple lattices

X-Ray Diffraction data from Deinococcus radiodurans Nramp/MntH divalent transition metal transporter mutant G223W, apo, source of 6D91 structure

39 wedges from LCP crystals collected with

X-Ray Diffraction data from Deinococcus radiodurans Nramp/MntH divalent transition metal transporter mutant G45R, source of 6C3I structure

Two wedges from separate LCP crystals were combined for a final data set that consisted of frames 1-400 of RG007_02_2 and frames 1-150 of RG007_03_1.

X-Ray Diffraction data from Deinococcus radiodurans Nramp/MntH divalent transition metal transporter in the outward-open, mangan, source of 6BU5 structure

Native dataset from 23 separate wedges from ~15 separate LCP crystals. Image files that start RG006_0101 are from the first wedge, RG006_0102 are from the second wedge etc. Only the frames from each wedge with usable diffraction data are included.

X-Ray Diffraction data from SpoIIE from Bacillus subtilis, source of 5UCG structure

Original images for 5UCG: Structure of the PP2C Phosphatase Domain and a Fragment of the Regulatory Domain of the Cell Fate Determinant SpoIIE from Bacillus Subtilis. From Bradshaw et al. eLife 2017;6:e26111.

X-Ray Diffraction data from Human Protocadherin-15 EC3-5 D414A Variant, source of 5T4N structure

Native dataset used to determine the structure of Human Protocadherin-15 EC3-5 D414A Variant using molecular replacement.

X-Ray Diffraction data from Mouse Protocadherin-15 EC4-5, source of 5T4M structure

Native dataset used to determine low resolution structure of Mouse Protocadherin-15 EC4-5. The EC4-5 structure was then used as a molecular replacement search model to determine the structure of Human Protocadherin-15 EC3-5 (PDB Code: 5T4M)

X-Ray Diffraction data from Human Protocadherin-15 EC3-5, source of 5T4M structure

Native dataset of Human Protocadherin-15 EC3-5 used to determine structure using molecular replacement.

X-Ray Diffraction data from Fab against Deinococcus radiodurans MntH, source of structure

Native dataset.

X-Ray Diffraction data from Deinococcus radiodurans MntH in complex with Fab, source of 5KTE structure

The second of two osmium containing data sets.

X-Ray Diffraction data from Deinococcus radiodurans MntH in complex with Fab, source of 5KTE structure

One of two Osmium containing data sets.

X-Ray Diffraction data from Deinococcus radiodurans MntH in complex with Fab, source of 5KTE structure

Native dataset.

X-Ray Diffraction data from human PcdhgB3 EC1-4, source of 5K8R structure

Native data

X-Ray Diffraction data from mouse PcdhgC3 EC1-3, source of 4ZI8 structure

Native dataset

X-Ray Diffraction data from mouse PcdhgA1 EC1-3, source of 4ZI9 structure

Native dataset

X-Ray Diffraction data from TRPV1-ARD, source of 2PNN structure

TRPV1-ARD native dataset

X-Ray Diffraction data from TRPV1-ARD, source of 2NYJ structure

Seleno-methionine single wavelength anomalous diffraction dataset