X-Ray Diffraction data from TRPV1-ARD, source of 2NYJ structure

Data DOI: 10.15785/SBGRID/14 | ID: 14

Publication DOI: 10.1016/j.neuron.2007.05.027

2NYJ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Gaudet Laboratory, Harvard University

Release Date: May 5, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/14

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/14 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/14 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/14 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/14 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 14 ; shasum -c files.sha'

Storage requirements: 2.2G

Biological Sample:

TRPV1-ARD

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

APS BM8

Data Creation Date:

June 4, 2004

Related Datasets:

None


Cite this Dataset

Jin, X; Gaudet, R. 2015. "X-Ray Diffraction data for: TRPV1-ARD. PDB Code 2NYJ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/14.

Download Citation

Dataset Description

Seleno-methionine single wavelength anomalous diffraction dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Xiangshu JinData CollectorNIBS, China
Rachelle GaudetDepositor, PIHarvard University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97907

Sweep:

SWEEP1

Files:

/programs/datagrid/14/junk3_001_1_###.img

Images:

1 - 120

Beam:

(156.24, 156.39) -> (156.24, 156.76)

Distance:

350.0 -> 351.6

Spacegroup:

P 3 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.07 8.3 3.07
Low resolution limit 34.24 34.24 3.12
Completeness 97.6 98.0 95.7
Multiplicity 7.3 6.2 7.5
I/sigma 12.1 34.2 0.9
Rmerge 0.073 0.044 2.274
CC half 0.997 0.994 0.591
Anomalous completeness 97.1 95.0 95.5
Anomalous multiplicity 3.9 3.9 3.9
Cell 124.74 124.74 62.85 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97907

Sweep:

SWEEP1

Files:

/programs/datagrid/14/junk3_001_1_###.img

Images:

1 - 120

Beam:

(156.24, 156.39) -> (156.24, 156.75)

Distance:

350.0 -> 350.51

Spacegroup:

P 3 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.89 10.46 3.89
Low resolution limit 34.24 34.24 3.96
Completeness 98.5 97.3 98.1
Multiplicity 7.1 5.9 7.2
I/sigma 20.4 33.4 7.5
Rmerge 0.051 0.045 0.193
CC half 0.997 0.994 0.996
Anomalous completeness 97.8 92.5 97.9
Anomalous multiplicity 3.8 3.8 3.8
Cell 124.74 124.74 62.85 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97907

Sweep:

SWEEP1

Files:

/programs/datagrid/14/junk3_001_1_###.img

Images:

1 - 120

Beam:

(156.24, 156.39) -> (156.24, 156.74)

Distance:

350.0 -> 357.73

Spacegroup:

P 3 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.0 8.13 3.0
Low resolution limit 55.17 55.18 3.05
Completeness 99.0 95.3 85.5
Multiplicity 7.1 6.2 7.6
I/sigma 7.2 19.5 0.9
Rmerge 0.12 0.077 2.153
CC half 0.993 0.985 0.943
Anomalous completeness 98.9 94.6 86.0
Anomalous multiplicity 3.7 3.7 3.7
Cell 126.527 126.527 63.847 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.