Data DOI: 10.15785/SBGRID/14 | ID: 14
Publication DOI: 10.1016/j.neuron.2007.05.027
2NYJ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Gaudet Laboratory, Harvard University
Release Date: 5 May 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/14
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/14 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/14 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/14 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/14 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 14 ; shasum -c files.sha'
Storage requirements: 2.2G
Biological Sample:
TRPV1-ARD
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
APS BM8
Data Creation Date:
4 Jun 2004
Related Datasets:
None
Jin, X; Gaudet, R. 2015. "X-Ray Diffraction data for: TRPV1-ARD. PDB Code 2NYJ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/14.
Seleno-methionine single wavelength anomalous diffraction dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Xiangshu Jin | Data Collector | NIBS, China |
| Rachelle Gaudet | Depositor, PI | Harvard University |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97907
Sweep:
SWEEP1
Files:
/programs/datagrid/14/junk3_001_1_###.img
Images:
1 - 120
Beam:
(156.24, 156.39) -> (156.24, 156.76)
Distance:
350.0 -> 351.77
Spacegroup:
P 3 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.59 | 7.02 | 2.59 |
| Low resolution limit | 40.98 | 40.98 | 2.63 |
| Completeness | 99.3 | 94.9 | 99.2 |
| Multiplicity | 7.3 | 6.3 | 7.4 |
| I/sigma | 7.9 | 34.6 | 0.3 |
| Rmerge | 0.104 | 0.035 | 6.481 |
| CC half | 0.998 | 0.998 | 0.346 |
| Anomalous completeness | 98.8 | 92.8 | 98.8 |
| Anomalous multiplicity | 3.8 | 3.8 | 3.8 |
| Cell | 124.79 | 124.79 | 62.87 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97907
Sweep:
SWEEP1
Files:
/programs/datagrid/14/junk3_001_1_###.img
Images:
1 - 120
Beam:
(156.24, 156.39) -> (156.24, 156.75)
Distance:
350.0 -> 350.47
Spacegroup:
P 3 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.59 | 7.01 | 2.59 |
| Low resolution limit | 34.24 | 34.24 | 2.63 |
| Completeness | 99.3 | 95.2 | 99.3 |
| Multiplicity | 7.3 | 6.3 | 7.4 |
| I/sigma | 7.9 | 34.7 | 0.3 |
| Rmerge | 0.105 | 0.035 | 6.564 |
| CC half | 0.998 | 0.998 | 0.365 |
| Anomalous completeness | 98.8 | 93.1 | 99.0 |
| Anomalous multiplicity | 3.8 | 3.8 | 3.8 |
| Cell | 124.75 | 124.75 | 62.85 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97907
Sweep:
SWEEP1
Files:
/programs/datagrid/14/junk3_001_1_###.img
Images:
1 - 120
Beam:
(156.24, 156.39) -> (156.24, 156.74)
Distance:
350.0 -> 357.89
Spacegroup:
P 3 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.4 | 6.51 | 2.4 |
| Low resolution limit | 54.92 | 54.94 | 2.44 |
| Completeness | 99.8 | 99.8 | 98.8 |
| Multiplicity | 7.3 | 6.7 | 7.6 |
| I/sigma | 4.1 | 43.8 | 0.0 |
| Rmerge | 0.138 | 0.049 | 32.663 |
| CC half | 0.991 | 0.982 | 0.291 |
| Anomalous completeness | 99.6 | 99.6 | 98.9 |
| Anomalous multiplicity | 3.8 | 3.8 | 3.8 |
| Cell | 125.946 | 125.946 | 63.569 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
