X-Ray Diffraction data from TRPV1-ARD, source of 2PNN structure

Data DOI: 10.15785/SBGRID/15 | ID: 15

Publication DOI: 10.1016/j.neuron.2007.05.027

2PNN Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Gaudet Laboratory, Harvard University

Release Date: May 5, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/15

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/15 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/15 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/15 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/15 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 15 ; shasum -c files.sha'

Storage requirements: 2.9G

Biological Sample:

TRPV1-ARD

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

In-house MicroMax007, osmic mirrors, Raxis-IV++

Data Creation Date:

April 21, 2006

Related Datasets:

None


Cite this Dataset

Jin, X; Gaudet, R. 2015. "X-Ray Diffraction data for: TRPV1-ARD. PDB Code 2PNN", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/15.

Download Citation

Dataset Description

TRPV1-ARD native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Xiangshu JinData CollectorNIBS, China
Rachelle GaudetDepositor, PIHarvard University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.5418

Sweep:

SWEEP1

Files:

/programs/datagrid/15/v1n4_041906a####.osc

Images:

1 - 170

Beam:

(149.43, 150.11) -> (149.43, 151.02)

Distance:

-200.0 -> 200.0

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.57 6.97 2.57
Low resolution limit 45.37 45.38 2.61
Completeness 73.3 73.9 70.6
Multiplicity 1.8 1.8 1.7
I/sigma 3.0 4.5 1.2
Rmerge 0.195 0.4 0.395
CC half 0.829 0.688 0.451
Anomalous completeness 50.8 59.5 43.3
Anomalous multiplicity 1.0 1.0 1.0
Cell 67.22 67.324 67.601 94.984 94.524 94.974

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.5418

Sweep:

SWEEP1

Files:

/programs/datagrid/15/v1n4_041906a####.osc

Images:

1 - 170

Beam:

(149.43, 150.11) -> (149.43, 150.2)

Distance:

-200.0 -> -200.04

Spacegroup:

H 3 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.3 6.22 2.3
Low resolution limit 28.92 28.93 2.34
Completeness 99.7 99.8 97.8
Multiplicity 9.7 9.5 6.0
I/sigma 6.9 14.2 1.0
Rmerge 0.188 0.121 1.38
CC half 0.992 0.993 0.354
Anomalous completeness 99.7 99.2 97.1
Anomalous multiplicity 5.1 5.1 5.1
Cell 99.36 99.36 106.73 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.5418

Sweep:

SWEEP1

Files:

/programs/datagrid/15/v1n4_041906a####.osc

Images:

1 - 170

Beam:

(149.43, 150.11) -> (149.43, 150.21)

Distance:

-200.0 -> -198.84

Spacegroup:

H 3 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.3 6.24 2.3
Low resolution limit 49.69 49.7 2.34
Completeness 99.8 99.4 97.7
Multiplicity 9.6 9.4 6.0
I/sigma 6.9 14.4 1.0
Rmerge 0.185 0.117 1.442
CC half 0.908 0.855 0.37
Anomalous completeness 99.8 99.2 97.3
Anomalous multiplicity 5.1 5.1 5.1
Cell 99.38 99.38 106.76 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.5418

Sweep:

SWEEP1

Files:

/programs/datagrid/15/v1n4_041906a####.osc

Images:

1 - 170

Beam:

(149.43, 150.11) -> (149.43, 150.21)

Distance:

-200.0 -> -198.62

Spacegroup:

H 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.38 6.45 2.38
Low resolution limit 33.5 33.5 2.42
Completeness 99.9 99.9 98.6
Multiplicity 5.2 5.3 3.8
I/sigma 5.0 10.4 1.1
Rmerge 0.16 0.103 0.803
CC half 0.981 0.967 0.556
Anomalous completeness 92.1 97.0 79.0
Anomalous multiplicity 2.7 2.7 2.7
Cell 99.407 99.407 106.676 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.