Data DOI: 10.15785/SBGRID/362 | ID: 362
5T4M Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Gaudet Laboratory, Harvard University
Release Date: 14 Feb 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/362
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/362 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/362 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/362 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/362 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 362 ; shasum -c files.sha'
Storage requirements: 1.6G
Biological Sample:
Mouse Protocadherin-15 EC4-5
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
24-ID-E, NE-CAT, APS, Chicago, IL
Data Creation Date:
21 Apr 2010
Related Datasets:
Powers, RE; Sotomayor, M; Gaudet, R. 2017. "X-Ray Diffraction data for: Mouse Protocadherin-15 EC4-5. PDB Code 5T4M", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/362.
Native dataset used to determine low resolution structure of Mouse Protocadherin-15 EC4-5. The EC4-5 structure was then used as a molecular replacement search model to determine the structure of Human Protocadherin-15 EC3-5 (PDB Code: 5T4M)
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Robert E Powers | Depositor | Biophysics Graduate Program, Harvard University, Boston MA 02115 |
| Rachelle Gaudet | Department of Molecular and Cellular Biology, Harvard University, Cambridge MA 02138 | |
| Marcos Sotomayor | Data Collector | Department of Chemistry and Biochemistry, The Ohio State University, Columbus OH 43210 |
| Rachelle Gaudet | PI | Harvard University |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97916
Sweep:
SWEEP1
Files:
/programs/datagrid/362/puck_D16_1_###.img
Images:
1 - 90
Beam:
(155.99, 165.44) -> (155.99, 165.43)
Distance:
449.99 -> 446.9
Spacegroup:
P 31 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.62 | 9.78 | 3.62 |
| Low resolution limit | 39.66 | 39.66 | 3.68 |
| Completeness | 99.9 | 98.2 | 99.8 |
| Multiplicity | 5.4 | 4.8 | 5.5 |
| I/sigma | 9.0 | 32.9 | 0.9 |
| Rmerge | 0.124 | 0.029 | 2.317 |
| CC half | 0.998 | 0.999 | 0.403 |
| Anomalous completeness | 98.5 | 96.4 | 96.0 |
| Anomalous multiplicity | 2.9 | 2.9 | 2.9 |
| Cell | 144.22 | 144.22 | 73.11 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97916
Sweep:
SWEEP1
Files:
/programs/datagrid/362/puck_D16_1_###.img
Images:
1 - 90
Beam:
(155.99, 165.44) -> (155.99, 165.43)
Distance:
449.99 -> 447.41
Spacegroup:
P 31 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.6 | 9.72 | 3.6 |
| Low resolution limit | 36.55 | 36.55 | 3.66 |
| Completeness | 99.9 | 98.4 | 99.6 |
| Multiplicity | 5.4 | 4.8 | 5.4 |
| I/sigma | 8.9 | 33.0 | 0.9 |
| Rmerge | 0.126 | 0.029 | 2.09 |
| CC half | 0.998 | 0.999 | 0.382 |
| Anomalous completeness | 98.6 | 96.5 | 96.8 |
| Anomalous multiplicity | 2.9 | 2.9 | 2.9 |
| Cell | 144.21 | 144.21 | 73.1 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97916
Sweep:
SWEEP1
Files:
/programs/datagrid/362/puck_D16_1_###.img
Images:
1 - 90
Beam:
(155.99, 165.44) -> (155.99, 165.42)
Distance:
449.99 -> 445.52
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.62 | 9.82 | 3.62 |
| Low resolution limit | 124.45 | 124.53 | 3.68 |
| Completeness | 94.3 | 89.0 | 88.5 |
| Multiplicity | 2.0 | 2.1 | 2.0 |
| I/sigma | 9.1 | 60.3 | 1.5 |
| Rmerge | 0.138 | 0.117 | 0.874 |
| CC half | 0.842 | 0.861 | 0.019 |
| Anomalous completeness | 78.5 | 89.5 | 71.2 |
| Anomalous multiplicity | 1.1 | 1.1 | 1.1 |
| Cell | 249.879 | 143.522 | 72.869 | 90.0 | 89.924 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
