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X-Ray Diffraction data from Deinococcus radiodurans Nramp/MntH divalent transition metal transporter mutant G223W, apo, source of 6D91 structure

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Data DOI: 10.15785/SBGRID/576 | ID: 576

Publication DOI: 10.7554/eLife.41124

6D91 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Gaudet Laboratory, Harvard University

Release Date: 5 Feb 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/576

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/576 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/576 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/576 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/576 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 576 ; shasum -c files.sha'

Storage requirements: 21G

Biological Sample:

Deinococcus radiodurans Nramp/MntH divalent transition metal transporter mutant G223W, apo

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS Beamline 24 ID-C

Data Creation Date:

15 Mar 2017

Related Datasets:

None


Cite this Dataset

Bozzi, AT; Gaudet, R. 2019. "X-Ray Diffraction data for: Deinococcus radiodurans Nramp/MntH divalent transition metal transporter mutant G223W, apo. PDB Code 6D91", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/576.

Download Citation

Dataset Description

39 wedges from LCP crystals collected with

Project Members

Name Additional Roles Affiliation While Working on the Project
Aaron T BozziData Collector, DepositorHarvard Univeristy
Rachelle Gaudet, PIHarvard University

Reprocessing Instructions

Indexed and integrated frames from each wedge separately in HKL2000 in space group C2 with unit cell dimensions of 102 x 76 x 53 Angstroms and 90, 98, 90 degrees, then scaled all frames together.

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d /programs/datagrid//576/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii /programs/datagrid//576/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials /programs/datagrid//576/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.