X-Ray Diffraction data from mouse PcdhgC3 EC1-3, source of 4ZI8 structure

Data DOI: 10.15785/SBGRID/174 | ID: 174

Publication DOI: 10.1016/j.str.2015.09.005

4ZI8 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Gaudet Laboratory, Harvard University

Release Date: Oct. 27, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/174

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/174 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/174 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/174 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/174 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 174 ; shasum -c files.sha'

Storage requirements: 3.0G

Biological Sample:

mouse PcdhgC3 EC1-3

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

24-ID-C, NE-CAT, APS, Chicago, IL

Data Creation Date:

Dec. 17, 2013

Related Datasets:

None


Cite this Dataset

Nicoludis, JM; Gaudet, R. 2015. "X-Ray Diffraction data for: mouse PcdhgC3 EC1-3. PDB Code 4ZI8", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/174.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
John M NicoludisData Collector, DepositorGraduate Student
Rachelle GaudetPIHarvard University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/174/RG001_15_1_####.cbf

Images:

1 - 500

Beam:

(216.67, 220.85) -> (216.67, 220.99)

Distance:

325.0 -> 325.3

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.81 4.91 1.81
Low resolution limit 82.53 82.62 1.84
Completeness 95.3 94.7 96.5
Multiplicity 3.4 3.4 3.4
I/sigma 6.1 15.2 1.0
Rmerge 0.108 0.042 1.433
CC half 0.993 0.992 0.307
Anomalous completeness 87.5 87.1 88.7
Anomalous multiplicity 1.9 1.9 1.9
Cell 44.33 82.532 238.067 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/174/RG001_15_1_####.cbf

Images:

1 - 500

Beam:

(216.67, 220.85) -> (216.67, 220.87)

Distance:

325.0 -> 325.33

Spacegroup:

P 2 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.98 5.37 1.98
Low resolution limit 78.52 78.58 2.01
Completeness 93.1 90.6 96.4
Multiplicity 3.5 3.1 3.8
I/sigma 6.8 17.9 1.1
Rmerge 0.101 0.036 1.376
CC half 0.861 0.848 0.466
Anomalous completeness 82.7 80.2 91.6
Anomalous multiplicity 1.9 1.9 1.9
Cell 44.61 83.09 240.15 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/174/RG001_15_1_####.cbf

Images:

1 - 500

Beam:

(216.67, 220.85) -> (216.67, 220.86)

Distance:

325.0 -> 325.42

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.92 5.21 1.92
Low resolution limit 82.53 82.61 1.95
Completeness 97.4 98.1 93.9
Multiplicity 3.6 3.4 3.5
I/sigma 8.7 23.1 1.4
Rmerge 0.076 0.034 0.989
CC half 0.997 0.997 0.711
Anomalous completeness 89.9 87.9 84.6
Anomalous multiplicity 2.0 2.0 2.0
Cell 44.31 82.53 238.57 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/174/RG001_15_1_####.cbf

Images:

1 - 500

Beam:

(216.67, 220.85) -> (216.67, 220.86)

Distance:

325.0 -> 325.69

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.86 5.05 1.86
Low resolution limit 82.55 82.63 1.89
Completeness 97.7 98.5 94.7
Multiplicity 3.6 3.5 3.6
I/sigma 5.7 13.7 0.9
Rmerge 0.09 0.039 1.101
CC half 0.995 0.991 0.645
Anomalous completeness 92.7 92.5 89.9
Anomalous multiplicity 2.0 2.0 2.0
Cell 44.323 82.548 238.682 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.