Native data for C. elegans HTP-2 bound to HTP-3 motif-6
Data DOI: 10.15785/SBGRID/207 | PDB ID 4TZN: RCSB PDBe | Publication DOI: 10.1016/j.devcel.2014.09.013 | Published: 18 Dec 2015
Corbett Laboratory, University of California, San Diego
Native data for C. elegans HTP-2 bound to HTP-3 closure motif 1
Data DOI: 10.15785/SBGRID/206 | PDB ID 4TZM: RCSB PDBe | Publication DOI: 10.1016/j.devcel.2014.09.013 | Published: 18 Dec 2015
Corbett Laboratory, University of California, San Diego
Native data for C. elegans HTP-2 bound to HIM-3 closure motif, P21 form
Data DOI: 10.15785/SBGRID/205 | PDB ID 4TZL: RCSB PDBe | Publication DOI: 10.1016/j.devcel.2014.09.013 | Published: 18 Dec 2015
Corbett Laboratory, University of California, San Diego
Native data for C. elegans HIM-3 bound to HTP-3 closure motif-4
Data DOI: 10.15785/SBGRID/204 | PDB ID 4TZJ: RCSB PDBe | Publication DOI: 10.1016/j.devcel.2014.09.013 | Published: 18 Dec 2015
Corbett Laboratory, University of California, San Diego
Native diffraction dataset of B. abortus WrpA protein
Data DOI: 10.15785/SBGRID/203 | PDB ID 5F51: RCSB PDBe | Publication DOI: 10.1128/JB.00982-15 | Published: 15 Dec 2015
Crosson Laboratory, University of Chicago
SeMet dataset
Data DOI: 10.15785/SBGRID/202 | PDB ID 5F4B: RCSB PDBe | Publication DOI: 10.1128/JB.00982-15 | Published: 15 Dec 2015
Crosson Laboratory, University of Chicago
Trypsin crystals were obtained according to the method of Liebschner et.al (Liebschner et al., 2013). Lyophilized bovine pancreas trypsin was purchased from Sigma-Aldrich (T1005) and dissolved at a concentration of 30 mg/mL into 30mM HEPES pH 7.0, 5 mg/mL benzamidine and 3mM CaCl2. Crystals were obtained from a solution of 200mM Ammonium sulfate, 100mM Na cacodylate pH 6.5, 20% PEG 8000 and 15% glycerol. Data collected for simultaneous Bragg and Diffuse Scattering processing.
Data DOI: 10.15785/SBGRID/201 | PDB ID 5F6M: RCSB PDBe | Published: 18 Dec 2015
Fraser Laboratory, University of California, San Francisco
Native dataset
Data DOI: 10.15785/SBGRID/200 | PDB ID 5C50: RCSB PDBe | Publication DOI: 10.1016/j.str.2015.07.011 | Published: 4 Dec 2015
Hurley Laboratory, University of California, Berkeley
NaBr soaked dataset
Data DOI: 10.15785/SBGRID/199 | PDB ID 5C50: RCSB PDBe | Publication DOI: 10.1016/j.str.2015.07.011 | Published: 4 Dec 2015
Hurley Laboratory, University of California, Berkeley
Iodine SAD dataset collected at 12670 electron volts. Crystal diffraction was measured at a temperature of 100 K using a 1 degree oscillation range.
Data DOI: 10.15785/SBGRID/198 | PDB ID 5CEG: RCSB PDBe | Publication DOI: 10.1016/j.cell.2015.09.055 | Published: 24 Nov 2015
Crosson Laboratory, University of Chicago
Diffraction data from this crystal of B. abortus RicA were collected at a temperature of 100 K using a 1° oscillation range.
Data DOI: 10.15785/SBGRID/197 | PDB ID 4N27: RCSB PDBe | Publication DOI: 10.1021/bi401373r | Published: 24 Nov 2015
Crosson Laboratory, University of Chicago
Native dataset for Hrr25:Mam1 complex, form 2
Data DOI: 10.15785/SBGRID/196 | PDB ID 5CZO: RCSB PDBe | Published: 9 Aug 2016
Corbett Laboratory, University of California, San Diego
Native diffraction data for S. cerevisiae Hrr25:Mam1, form 1
Data DOI: 10.15785/SBGRID/195 | PDB ID 5CYZ: RCSB PDBe | Published: 9 Aug 2016
Corbett Laboratory, University of California, San Diego
Native dataset
Data DOI: 10.15785/SBGRID/194 | PDB ID 5CXF: RCSB PDBe | Publication DOI: 10.1371/journal.ppat.1005227 | Published: 13 Nov 2015
Heldwein Laboratory, Tufts University School of Medicine
Native dataset
Data DOI: 10.15785/SBGRID/192 | PDB ID 5C6B: RCSB PDBe | Publication DOI: 10.1038/ncomms9143 | Published: 30 Oct 2015
McLellan Laboratory, University of Texas at Austin
Native dataset
Data DOI: 10.15785/SBGRID/191 | PDB ID 5C69: RCSB PDBe | Publication DOI: 10.1038/ncomms9143 | Published: 30 Oct 2015
McLellan Laboratory, University of Texas at Austin
MD trajectory. The coordinates of the OGT–UDP–peptide complex (PDB 3PE4) were optimized in the Protein Preparation Wizard (Schrodinger 2009) where hydrogens were added; water molecules, UDP and peptide were stripped; and the structure was minimized using the OPLS2001 forcefield. The 1-μm simulation used the CHARM27 forcefield46, and the simple point charge model for water47. The CHARM27 forcefield was applied to the system using the VIPARR utility. The default Desmond relaxation was performed before simulation, and molecular dynamics were run at constant temperature (300 K) and pressure (1 bar). The simulation was performed by using the program Desmond, version 2.2.9.1.030 compiled by SBGrid on an optimized 64-node Linux-based InfiniBand cluster and took 75 days to complete. Molecular dynamics trajectories were processed and animated with VMD48.
Data DOI: 10.15785/SBGRID/190 | PDB ID 3PE4: RCSB PDBe | Publication DOI: 10.1038/nature09638 | Published: 3 Nov 2015
Sliz Laboratory, Harvard Medical School
Native dataset.
Data DOI: 10.15785/SBGRID/189 | PDB ID 4ZXS: RCSB PDBe | Publication DOI: 10.15252/embj.201592359 | Published: 30 Oct 2015
Heldwein Laboratory, Tufts University School of Medicine
Soluble portion of pseudorabies virus nuclear egress complex.
Data DOI: 10.15785/SBGRID/188 | PDB ID 4Z3U: RCSB PDBe | Publication DOI: 10.15252/embj.201592359 | Published: 30 Oct 2015
Heldwein Laboratory, Tufts University School of Medicine
