X-Ray Diffraction data from E. coli class Ia ribonucleotide reductase dATP inhibited complex bound to GDP and TTP, source of 5CNV structure

Data DOI: 10.15785/SBGRID/240 | ID: 240

Publication DOI: 10.7554/eLife.07141

5CNV Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Drennan Laboratory, Massachusetts Institute of Technology

Release Date: March 25, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/240

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/240 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/240 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/240 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/240 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 240 ; shasum -c files.sha'

Storage requirements: 1.1G

Biological Sample:

E. coli class Ia ribonucleotide reductase dATP inhibited complex bound to GDP and TTP

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

Beamline 24-ID-C, NE-CAT, APS, Lemont, IL

Data Creation Date:

July 14, 2012

Related Datasets:

None


Cite this Dataset

Zimanyi, C; Drennan, C. 2016. "X-Ray Diffraction data for: E. coli class Ia ribonucleotide reductase dATP inhibited complex bound to GDP and TTP. PDB Code 5CNV", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/240.

Download Citation

Dataset Description

Native data set

Project Members

Name Additional Roles Affiliation While Working on the Project
Christina ZimanyiData Collector, DepositorDepartment of Chemistry, Massachusetts Institute of Technology
Catherine DrennanPIMassachusetts Institute of Technology

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9795

Sweep:

SWEEP1

Files:

/programs/datagrid/240/a4b4_gdp_01_1_####.cbf

Images:

1 - 180

Beam:

(218.89, 217.84) -> (218.89, 221.74)

Distance:

550.0 -> 548.64

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.13 8.5 3.13
Low resolution limit 119.7 119.79 3.18
Completeness 98.3 97.0 99.2
Multiplicity 3.4 3.3 3.6
I/sigma 9.1 27.0 1.1
Rmerge 0.1 0.027 1.102
CC half 0.995 0.998 0.437
Anomalous completeness 91.5 84.8 94.6
Anomalous multiplicity 1.8 1.8 1.8
Cell 274.88 157.9 165.95 90.0 119.43 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9795

Sweep:

SWEEP1

Files:

/programs/datagrid/240/a4b4_gdp_01_1_####.cbf

Images:

1 - 180

Beam:

(218.89, 217.84) -> (218.89, 221.75)

Distance:

550.0 -> 549.81

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 4.18 11.34 4.18
Low resolution limit 144.53 144.61 4.25
Completeness 97.8 96.5 99.3
Multiplicity 3.4 3.2 3.5
I/sigma 15.9 28.8 10.3
Rmerge 0.052 0.024 0.101
CC half 0.997 0.999 0.981
Anomalous completeness 89.9 84.9 91.5
Anomalous multiplicity 1.8 1.8 1.8
Cell 274.87 157.89 165.94 90.0 119.43 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9795

Sweep:

SWEEP1

Files:

/programs/datagrid/240/a4b4_gdp_01_1_####.cbf

Images:

1 - 180

Beam:

(218.89, 217.84) -> (218.89, 221.75)

Distance:

550.0 -> 552.91

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.46 9.39 3.46
Low resolution limit 145.17 145.3 3.52
Completeness 97.9 97.8 90.8
Multiplicity 3.4 3.4 3.5
I/sigma 8.5 20.9 3.3
Rmerge 0.087 0.028 0.327
CC half 0.995 0.998 0.866
Anomalous completeness 94.8 95.9 86.6
Anomalous multiplicity 1.8 1.8 1.8
Cell 276.283 158.647 166.801 90.0 119.501 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.