X-Ray Diffraction data from SrpA + Neu5Gc-Gal disaccharide, source of 5EQ3 structure

Data DOI: 10.15785/SBGRID/242 | ID: 242

5EQ3 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Iverson Laboratory, Vanderbilt University

Release Date: 1 Apr 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/242

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/242 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/242 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/242 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/242 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 242 ; shasum -c files.sha'

Storage requirements: 12G

Biological Sample:

SrpA + Neu5Gc-Gal disaccharide

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

APS 21-IDG

Data Creation Date:

27 Jun 2015

Related Datasets:

None


Cite this Dataset

Loukachevitch, LV; Iverson, TM. 2016. "X-Ray Diffraction data for: SrpA + Neu5Gc-Gal disaccharide. PDB Code 5EQ3", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/242.

Download Citation

Dataset Description

data with bound ligand

Project Members

Name Additional Roles Affiliation While Working on the Project
Tina M IversonDepositorVanderbilt
Lioudmila V LoukachevitchData CollectorVanderbilt
Tina IversonPIVanderbilt University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97856

Sweep:

SWEEP1

Files:

/programs/datagrid/242/srpasucarb_28.###

Images:

1 - 360

Beam:

(145.3, 155.51) -> (145.3, 155.6)

Distance:

270.0 -> 269.55

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.8 4.88 1.8
Low resolution limit 33.33 33.34 1.83
Completeness 98.3 99.6 80.6
Multiplicity 6.9 6.8 4.8
I/sigma 9.4 26.4 0.7
Rmerge 0.113 0.046 2.483
CC half 0.998 0.997 0.29
Anomalous completeness 97.2 97.7 78.4
Anomalous multiplicity 3.6 3.6 3.6
Cell 174.47 46.97 63.98 90.0 102.1 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97856

Sweep:

SWEEP1

Files:

/programs/datagrid/242/srpasucarb_28.###

Images:

1 - 360

Beam:

(145.3, 155.51) -> (145.3, 155.6)

Distance:

270.0 -> 269.63

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.8 4.89 1.8
Low resolution limit 85.3 85.4 1.83
Completeness 98.2 99.3 80.7
Multiplicity 6.9 6.8 4.8
I/sigma 9.4 26.3 0.7
Rmerge 0.113 0.046 2.48
CC half 0.998 0.997 0.304
Anomalous completeness 97.2 97.3 78.4
Anomalous multiplicity 3.6 3.6 3.6
Cell 174.48 46.97 63.98 90.0 102.1 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97856

Sweep:

SWEEP1

Files:

/programs/datagrid/242/srpasucarb_28.###

Images:

1 - 360

Beam:

(145.3, 155.51) -> (145.3, 155.69)

Distance:

270.0 -> 269.77

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.76 4.79 1.76
Low resolution limit 85.48 85.58 1.79
Completeness 96.5 100.0 69.6
Multiplicity 6.7 7.2 4.2
I/sigma 7.8 24.9 16.3
Rmerge 0.326 0.073 0.694
CC half 0.411 0.977 0.208
Anomalous completeness 95.7 100.0 66.8
Anomalous multiplicity 3.4 3.4 3.4
Cell 174.876 47.082 64.206 90.0 102.147 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.