X-Ray Diffraction data from BAZ2B bromodomain in complex with fragment F103, source of 5E9L structure

Data DOI: 10.15785/SBGRID/256 | ID: 256

Publication DOI: 10.1021/acschembio.5b00914

5E9L Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Caflisch Laboratory, University of Zurich

Release Date: April 15, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/256

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/256 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/256 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/256 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/256 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 256 ; shasum -c files.sha'

Storage requirements: 2.1G

Biological Sample:

BAZ2B bromodomain in complex with fragment F103

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

beamline PXIII, Swiss Light Source, Paul Scherrer Institute, Villigen, Switzerland

Data Creation Date:

July 5, 2015

Related Datasets:

None


Cite this Dataset

Lolli, G; Caflisch, A. 2016. "X-Ray Diffraction data for: BAZ2B bromodomain in complex with fragment F103. PDB Code 5E9L", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/256.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Graziano LolliData Collector, DepositorUniversity of Zurich
Amedeo Caflisch, PIUniversity of Zurich

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97942

Sweep:

SWEEP1

Files:

/programs/datagrid/256/b3s2_2_#####.cbf

Images:

1 - 900

Beam:

(146.37, 118.85) -> (146.37, 118.92)

Distance:

170.01 -> 170.39

Spacegroup:

C 2 2 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.73 4.69 1.73
Low resolution limit 42.18 42.19 1.76
Completeness 99.0 99.4 97.6
Multiplicity 5.8 6.3 5.2
I/sigma 7.7 20.0 0.8
Rmerge 0.085 0.055 1.358
CC half 0.997 0.996 0.776
Anomalous completeness 97.3 99.8 95.7
Anomalous multiplicity 3.1 3.1 3.1
Cell 80.715 96.008 57.726 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97942

Sweep:

SWEEP1

Files:

/programs/datagrid/256/b3s2_2_#####.cbf

Images:

1 - 900

Beam:

(146.37, 118.85) -> (146.37, 118.84)

Distance:

170.01 -> 171.41

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.81 4.91 1.81
Low resolution limit 42.26 42.27 1.84
Completeness 98.2 97.6 98.3
Multiplicity 6.4 6.5 6.9
I/sigma 8.8 23.4 0.9
Rmerge 0.066 0.029 1.502
CC half 0.999 0.999 0.777
Anomalous completeness 96.4 95.8 97.8
Anomalous multiplicity 3.4 3.4 3.4
Cell 57.79 80.95 96.23 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97942

Sweep:

SWEEP1

Files:

/programs/datagrid/256/b3s2_2_#####.cbf

Images:

1 - 900

Beam:

(146.37, 118.85) -> (146.37, 118.85)

Distance:

170.01 -> 170.57

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.8 4.89 1.8
Low resolution limit 57.79 57.82 1.83
Completeness 98.3 97.5 98.8
Multiplicity 6.5 6.5 6.9
I/sigma 8.7 23.2 0.8
Rmerge 0.066 0.029 1.701
CC half 0.999 0.999 0.761
Anomalous completeness 96.6 95.9 97.8
Anomalous multiplicity 3.4 3.4 3.4
Cell 57.79 80.94 96.22 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97942

Sweep:

SWEEP1

Files:

/programs/datagrid/256/b3s2_2_#####.cbf

Images:

1 - 900

Beam:

(146.37, 118.85) -> (146.37, 118.85)

Distance:

170.01 -> 170.34

Spacegroup:

C 2 2 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.69 4.59 1.69
Low resolution limit 61.93 61.97 1.72
Completeness 98.3 98.3 97.4
Multiplicity 5.8 6.2 5.3
I/sigma 6.0 14.6 0.8
Rmerge 0.082 0.042 1.231
CC half 0.996 0.998 0.654
Anomalous completeness 96.6 99.0 95.7
Anomalous multiplicity 3.1 3.1 3.1
Cell 80.9 96.243 57.811 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.