Maintance Thur 2026 Nov 12

The SBDB will be undergoing infrastructure maintance Thur 2026 Nov 12 between 10AM and 6PM ET. Dataset registrations, dataset depositions, and dataset downloads from the primary location will be unavailable; API access will also be impacted.

Lab/Institutional Collections
Datasets

X-Ray Diffraction data from Mouse Sidekick-2 immunoglobulin domains 1-4, crystal form 2, source of 5K6Y structure

Native dataset

X-Ray Diffraction data from Mouse Sidekick-2 immunoglobulin domains 1-4, crystal form 1, source of 5K6X structure

Native dataset

X-Ray Diffraction data from Mouse Sidekick-1 immunoglobulin domains 1-5, source of 5K6W structure

Native dataset

XFEL Diffraction data from Synaptotagmin-1 / SNARE complex, source of 5KJ7 structure

The XFEL data were collected at the X-ray Pump Probe (XPP) endstation of the Linac Coherent Light Source (LCLS) at the SLAC National Accelerator Laboratory, using a goniometer-based fixed target sample delivery station and an automatic sample loading system. We used a 30-micron XFEL beam with a pulse duration of 40 fs in SASE mode. A total of 148 crystals were screened, yielding 789 images with usable diffraction.

X-Ray Diffraction data from Brucella periplasmic binding protein YehZ, source of 5TEU structure

native x-ray diffraction dataset

X-Ray Diffraction data from Human Protocadherin-15 EC3-5 D414A Variant, source of 5T4N structure

Native dataset used to determine the structure of Human Protocadherin-15 EC3-5 D414A Variant using molecular replacement.

X-Ray Diffraction data from Mouse Protocadherin-15 EC4-5, source of 5T4M structure

Native dataset used to determine low resolution structure of Mouse Protocadherin-15 EC4-5. The EC4-5 structure was then used as a molecular replacement search model to determine the structure of Human Protocadherin-15 EC3-5 (PDB Code: 5T4M)

X-Ray Diffraction data from Human Protocadherin-15 EC3-5, source of 5T4M structure

Native dataset of Human Protocadherin-15 EC3-5 used to determine structure using molecular replacement.

X-Ray Diffraction data from human metapneumovirus fusion protein in postfusion conformation, source of 5L1X structure

Native dataset

X-Ray Diffraction data from Human Dpf3 double-PHD domain bound to histone H3 tail peptide with monomethylated K4/acetylated K14, source of 5SZC structure

Native data for PDB entry 5SZC

X-Ray Diffraction data from Human Dpf3 double-PHD domain bound to histone H3 tail peptide with acetylated K14, source of 5SZB structure

Native data for PDB 5SZB

X-Ray Diffraction data from Human Dpf3 double-PHD domain bound to histone H3 tail peptide with acetylated K14, source of 5SZB structure

Zinc SAD data for PDB entry 5SZB

X-Ray Diffraction data from Methyltransferase domain of EvdMO1 crystallized in the presence of 2 mM SAH + 10 mM fucose, source of structure

X-ray diffraction data for the methyltransferase domain of EvdMO1 (EvdMdO1) to 1.10 A resolution. Data were collected from a sample co-crystallized in the presence of 2 mM SAH and 10 mM fucose. No density for the fucose is observed, but an active site loop becomes disordered in the presence of fucose.

X-Ray Diffraction data from Methyltransferase domain of EvdMO1 crystallized with 2 mM SAH, source of structure

X-ray diffraction data for the methyltransferase domain of EvdMO1 (EvdMdO1) to 1.15 A resolution.

X-Ray Diffraction data from EvdMO1, source of structure

X-ray diffraction data to 3.35 A resolution for the full-length EvdMO1 enzyme

X-Ray Diffraction data from Human Annexin A13a, source of 6B3I structure

Native dataset to 2.6 A resolution of Human Annexin A13a

X-Ray Diffraction data from Fluoroacetate dehalogenase, source of structure

Fluoroacetate dehalogenase Apo with no Halides

X-Ray Diffraction data from Fluoroacetate dehalogenase, source of structure

Fluoroacetate dehalogenase H280N with covalent intermediate in both subunits

X-Ray Diffraction data from Fluoroacetate dehalogenase, source of structure

Fluoroacetate dehalogenase H280N with covalent intermediate in 1 subunit

X-Ray Diffraction data from Catalytic domains of Human Mettl3/Mettl14 complex with SAH, source of 5K7W structure

Native dataset