X-Ray Diffraction data from acetyl-CoA:oxalate CoA-transferase YfdE (EC 2.8.3.19), source of 4HL6 structure

Data DOI: 10.15785/SBGRID/272 | ID: 272

Publication DOI: 10.1371/journal.pone.0067901

4HL6 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Kappock Laboratory, Purdue University

Release Date: May 27, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/272

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/272 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/272 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/272 .' (Institut Pasteur de Montevideo, Uruguay)

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3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 272 ; shasum -c files.sha'

Storage requirements: 12G

Biological Sample:

acetyl-CoA:oxalate CoA-transferase YfdE (EC 2.8.3.19)

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

beamline 21-ID-G, LS-CAT, APS, Chicago, IL

Data Creation Date:

June 27, 2012

Related Datasets:

None


Cite this Dataset

Mullins, EA; Nyffeler, KE.; Sullivan, KL.; Kappock, T. 2016. "X-Ray Diffraction data for: acetyl-CoA:oxalate CoA-transferase YfdE (EC 2.8.3.19). PDB Code 4HL6", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/272.

Download Citation

Dataset Description

Structure of YfdE from Escherichia coli

Project Members

Name Additional Roles Affiliation While Working on the Project
Elwood A MullinsPurdue University
Kayleigh E. NyffelerPurdue University
Kelly L. SullivanData CollectorPurdue University
T. Joseph KappockData Collector, Depositor, PIPurdue University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97856

Sweep:

SWEEP1

Files:

/programs/datagrid/272/H6YfdE_1.###

Images:

1 - 360

Beam:

(145.81, 155.53) -> (145.81, 155.37)

Distance:

275.0 -> 271.18

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.52 6.84 2.52
Low resolution limit 62.76 62.78 2.56
Completeness 98.3 95.6 99.3
Multiplicity 3.8 3.6 3.8
I/sigma 2.3 3.2 1.0
Rmerge 0.203 0.063 1.202
CC half 0.988 0.993 0.767
Anomalous completeness 93.4 87.3 97.1
Anomalous multiplicity 2.0 2.0 2.0
Cell 816.91 159.13 111.49 90.0 96.29 90.0

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.