Data DOI: 10.15785/SBGRID/288 | ID: 288
Publication DOI: 10.1038/nmeth.4178
5k7r Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Gonen Laboratory, University of California, Los Angeles
Release Date: 31 Mar 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/288
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/288 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/288 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/288 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/288 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 288 ; shasum -c files.sha'
Storage requirements: 12G
Biological Sample:
Trypsin
Dataset Type:
Microcrystal Electron Diffraction
Subject Composition:
Protein
Collection Facility:
FEI TF20 (Janelia Research Campus)
Data Creation Date:
10 Mar 2016
Related Datasets:
None
Hattne, J; de la Cruz, J; Gonen, T. 2017. "Microcrystal Electron Diffraction data for: Trypsin. PDB Code 5k7r", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/288.
Micro-electron diffraction data from trypsin
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Johan Hattne | Depositor | HHMI Janelia Research Campus |
| Jason de la Cruz | Data Collector | HHMI Janelia Research Campus |
| Tamir Gonen | PI | University of California, Los Angeles |
Convert corrected images to SMV: $ img2px -d 2640 -s 6.0 -o 20160310_sq_10_02/tryp_###.img 1-5m_4s_sq10_02_000.tvips $ img2px -d 3080 -s 5.0 -o 20160310_sq_05_01/tryp_###.img 1-75m_4s_sq05_01_000.tvips $ img2px -d 3080 -s 5.0 -o 20160310_sq_09_02/tryp_###.img 1-75m_4s_sq09_02_000.tvips $ img2px -d 2640 -s 4.8 -o 20160318_sq_01_01/tryp_###.img 1-5m_4s_sq01_01_000.tvips $ img2px -d 2640 -s 5.0 -o 20160318_sq_04_01/tryp_###.img 1-5m_4s_sq04_01_000.tvips $ img2px -d 2640 -s 5.0 -o 20160318_sq_04_02/tryp_###.img 1-5m_4s_sq04_02_000.tvips $ img2px -d 2640 -s 4.6 -o 20160318_sq_11_01/tryp_###.img 1-5m_4s_sq11_01_000.tvips $ img2px -d 2640 -s 4.4 -o 20160318_sq_11_02/tryp_###.img 1-5m_4s_sq11_02_000.tvips $ img2px -d 2640 -s 5.2 -o 20160318_sq_15_01/tryp_###.img 1-5m_4s_sq15_01_000.tvips $ img2px -d 2640 -s 5.8 -o 20160316_sq_07_01/tryp_###.img 1-5m_4s_sq07_01_000.tvips MOSFLM processing parameters: DATASET ADC offset GAIN Direction of spindle rotation 1-5m_4s_sq10_02 13 5 Forward 1-75m_4s_sq05_01 13 5 Forward 1-75m_4s_sq09_02 13 5 Forward 1-5m_4s_sq01_01 15 5 Forward 1-5m_4s_sq04_01 15 5 Forward 1-5m_4s_sq04_02 15 5 Forward 1-5m_4s_sq11_01 15 5 Forward 1-5m_4s_sq11_02 15 5 Forward 1-5m_4s_sq15_01 14 5 Forward 1-5m_4s_sq07_01 13 5 Forward
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
