Lab/Institutional Collections
Datasets

X-Ray Diffraction data from Flavin-dependent tryptophan 6-halogenase Thal in complex with 6-bromo-Ltryptophan, source of 9H6N structure

native data

X-Ray Diffraction data from Flavin-dependent tryptophan 7-halogenase RebH in complex with 6-bromo-Ltryptophan, source of 9H6M structure

data with anomalous signal from bromine

X-Ray Diffraction data from InlB392_V333E (Listeria monocytogenes InlB (internalin B), residues 36-392; V333E mutation), source of 9QR5 structure

native data

X-Ray Diffraction data from InlB392_T336Y (Listeria monocytogenes InlB (internalin B), residues 36-392; T336Y mutation), source of 9QR4 structure

native data

Microcrystal Electron Diffraction data from MutT homolog 1 and it's substrate 8-oxo-dGTP, source of structure

Continous Serial Electron Diffraction Data of MutT homolog 1 and its substrate 8-oxo-dGTP

X-Ray Diffraction data from Miniaturized HLA A*02-TAX bound to A6c134 TCR, source of 9NDS structure

Native Dataset

X-Ray Diffraction data from c-Src SH3 domain, source of 9OFX structure

X-Ray Diffraction data for c-Src SH3 domain

Microcrystal Electron Diffraction data from Urate Oxidase from Aspergillus flavus complexed with uric acid, source of structure

Serial electron diffraction (SerialED) data of Urate Oxidase from Aspergillus flavus complexed with uric acid

X-Ray Diffraction data from Patiria miniata Hop1 chromatin binding region, source of 9MYP structure

Zinc anomalous SAD dataset

AF-M predictions accompanying the manuscript: Predictomes: A classifier-curated database of AlphaFold-modeled protein-protein interactions

The set of all AlphaFold multimer (AF-M) v2.3 pairwise structure predictions accompanying the publication: Predictomes: A classifier-curated database of AlphaFold-modeled protein-protein interactions. This dataset includes prediction pairs used for training random forest classifiers including SPOC, pairs used for 30 ranking experiments, all pairs that belong to the genome maintenance matrix on predictomes.org, and three proteome wide in-silico interaction screens conducted with human DONSON, human STK19, and human USP37. All pairs were generated with ColabFold v1.5.2. All our predictions used AF-M multimer version 3 weights models 1, 2, and 4 with 3 recycles, templates enabled, 1 ensemble, no dropout, and no AMBER relaxation. The Multiple Sequence Alignments (MSAs) (unpaired + paired) supplied to AF-M were generated by the MMSeqs2 server using default settings. Sequences run were generally capped at 3,600 amino acids total to avoid memory exhaustion on GPUs.

Microcrystal Electron Diffraction data from Urate Oxidase from Aspergillus flavus complexed with 9-methyl uric acid, source of structure

Serial electron diffraction (SerialED) data of Urate Oxidase from Aspergillus flavus complexed with 9-methyl uric acid

X-Ray Diffraction data from Schistosoma mansoni Hop1 chromatin binding region, source of 9MUG structure

Zinc SAD dataset

X-Ray Diffraction data from Structure of a designed minibinder to NYESO1-A*02:01, source of 9MIN structure

native dataset

Microcrystal Electron Diffraction data from Triclinic hen egg-white lysozyme, source of structure

Serial electron diffraction (SerialED) data of triclinic hen egg-white lysozyme

Microcrystal Electron Diffraction data from Dye Type Peroxidase Aa from Streptomyces lividans, source of 9FYK structure

Serial electron diffraction (SerialED) data of Dye Type Peroxidase Aa from Streptomyces lividans

X-Ray Diffraction data from designed IL-21 mimetic complex with IL21R and IL-2Rg, source of 9E2T structure

native dataset

X-Ray Diffraction data from SHP2 tandem SH2 domains in complex with PZR doubly tyrosine phosphorylated ITIM peptide, source of 9MQ5 structure

X-ray diffraction images

Microcrystal Electron Diffraction data from Dye Type Peroxidase Aa from Streptomyces lividans, source of 9FY7 structure

Serial electron diffraction (SerialED) data of Dye Type Peroxidase Aa from Streptomyces lividans complexed with azide (N3-)

X-Ray Diffraction data from Citrobacter BubCD(D104A/Y370F)-BubB-BubA(155-229), source of 9EAV structure

native dataset

X-Ray Diffraction data from Citrobacter BubCD(D104A)-BubB, source of 9EAE structure

native dataset