Micro-Electron Diffraction data from Lysozyme, source of 5k7o structure

Data DOI: 10.15785/SBGRID/285 | ID: 285

Publication DOI: 10.1038/nmeth.4178

5k7o Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB


Gonen Laboratory, University of California, Los Angeles

Release Date: March 31, 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/285

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/285 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/285 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/285 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/285 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 285 ; shasum -c files.sha'

Storage requirements: 8.3G

Biological Sample:


Dataset Type:

Microcrystal Electron Diffraction

Subject Composition:


Collection Facility:

FEI TF20 (Janelia Research Campus)

Data Creation Date:

March 10, 2016

Related Datasets:


Cite this Dataset

Hattne, J; de la Cruz, J; Gonen, T. 2017. "Microcrystal Electron Diffraction data for: Lysozyme. PDB Code 5k7o", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/285.

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Dataset Description

Micro-electron diffraction data from lysozyme

Project Members

Name Additional Roles Affiliation While Working on the Project
Johan HattneDepositorHHMI Janelia Research Campus
Jason de la CruzData CollectorHHMI Janelia Research Campus
Tamir GonenPIUniversity of California, Los Angeles

Reprocessing Instructions

Convert corrected images to SMV: $ img2px -d 2640 -s 5.0 -o 20160310_sq_01_01/lyso_###.img 1-5m_4s_sq01_01_000.tvips $ img2px -d 2640 -s 5.0 -o 20160310_sq_02_02/lyso_###.img 1-5m_4s_sq02_02_000.tvips $ img2px -d 2640 -s 10.0 -o 20160310_sq_03_02/lyso_###.img 1-5m_4s_sq03_02_000.tvips $ img2px -d 2640 -s 4.9 -o 20160311_sq_03_01/lyso_###.img 1-5m_4s_sq03_01_000.tvips $ img2px -d 2640 -s 6.0 -o 20160311_sq_06_02/lyso_###.img 1-5m_4s_sq06_02_000.tvips $ img2px -d 2640 -s 11.0 -o 20160311_sq_08_01/lyso_###.img 1-5m_4s_sq08_01_000.tvips $ img2px -d 2640 -s 6.0 -o 20160311_sq_08_02/lyso_###.img 1-5m_4s_sq08_02_000.tvips MOSFLM processing parameters: DATASET ADC offset GAIN Direction of spindle rotation 1-5m_4s_sq01_01 14 5 Forward 1-5m_4s_sq02_02 14 5 Forward 1-5m_4s_sq03_02 11 5 Forward 1-5m_4s_sq03_01 14 5 Forward 1-5m_4s_sq06_02 13 5 Forward 1-5m_4s_sq08_01 10 5 Forward 1-5m_4s_sq08_02 13 5 Forward

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.