Data DOI: 10.15785/SBGRID/265 | ID: 265
Publication DOI: 10.1016/j.str.2016.03.002
5IGQ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Blacklow Laboratory, Harvard Medical School
Release Date: May 27, 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/265
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/265 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/265 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/265 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/265 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 265 ; shasum -c files.sha'
Storage requirements: 1.6G
Biological Sample:
WD40 domain of Human E3 Ubiquitin Ligase COP1 (RFWD2) bound to peptide from Trib1
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
APS 24 ID D
Data Creation Date:
April 10, 2014
Related Datasets:
None
Uljon, S; Xu, X; Blacklow, S. 2016. "X-Ray Diffraction data for: WD40 domain of Human E3 Ubiquitin Ligase COP1 (RFWD2) bound to peptide from Trib1. PDB Code 5IGQ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/265.
single wavelength dataset of single crystal
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Sacha Uljon | Data Collector, Depositor | Brigham and Women's Hospital |
| Xiang Xu | HMS | |
| Stephen Blacklow | PI | Harvard Medical School |
none
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97921
Sweep:
SWEEP1
Files:
/programs/datagrid/265/2_08_06_1_###.img
Images:
1 - 90
Beam:
(152.07, 158.67) -> (152.07, 158.76)
Distance:
450.0 -> 453.25
Spacegroup:
P 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 5.79 | 15.62 | 5.79 |
| Low resolution limit | 58.72 | 58.72 | 5.89 |
| Completeness | 92.1 | 80.2 | 94.0 |
| Multiplicity | 2.0 | 2.0 | 2.0 |
| I/sigma | 10.5 | 17.3 | 5.3 |
| Rmerge | 0.046 | 0.03 | 0.14 |
| CC half | 0.996 | 0.992 | 0.945 |
| Anomalous completeness | 82.2 | 83.1 | 80.9 |
| Anomalous multiplicity | 1.1 | 1.1 | 1.1 |
| Cell | 175.69 | 124.64 | 176.17 | 90.0 | 90.46 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97921
Sweep:
SWEEP1
Files:
/programs/datagrid/265/2_08_06_1_###.img
Images:
1 - 90
Beam:
(152.07, 158.67) -> (152.07, 158.76)
Distance:
450.0 -> 453.23
Spacegroup:
P 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 4.0 | 10.86 | 4.0 |
| Low resolution limit | 124.64 | 124.7 | 4.07 |
| Completeness | 94.7 | 85.5 | 97.4 |
| Multiplicity | 2.0 | 2.1 | 2.0 |
| I/sigma | 5.6 | 16.1 | 0.9 |
| Rmerge | 0.09 | 0.035 | 1.612 |
| CC half | 0.995 | 0.994 | 0.459 |
| Anomalous completeness | 80.3 | 86.4 | 78.0 |
| Anomalous multiplicity | 1.1 | 1.1 | 1.1 |
| Cell | 175.69 | 124.64 | 176.16 | 90.0 | 90.46 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97921
Sweep:
SWEEP1
Files:
/programs/datagrid/265/2_08_06_1_###.img
Images:
1 - 90
Beam:
(152.07, 158.67) -> (152.07, 158.74)
Distance:
450.0 -> 450.93
Spacegroup:
C 2 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.89 | 10.56 | 3.89 |
| Low resolution limit | 102.06 | 102.1 | 3.96 |
| Completeness | 95.5 | 91.3 | 50.5 |
| Multiplicity | 3.5 | 3.5 | 3.2 |
| I/sigma | 3.4 | 6.6 | 1.3 |
| Rmerge | 0.14 | 0.046 | 0.77 |
| CC half | 0.991 | 0.995 | 0.559 |
| Anomalous completeness | 92.8 | 94.8 | 49.3 |
| Anomalous multiplicity | 1.8 | 1.8 | 1.8 |
| Cell | 250.685 | 248.639 | 125.091 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
