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X-Ray Diffraction data from p120RasGAP SH2-SH3-SH2 in complex with p190RhoGAP doubly phosphorylated peptide, source of 8DGQ structure

Data DOI: 10.15785/SBGRID/879 | ID: 879

8DGQ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Boggon Laboratory, Yale University School of Medicine

Release Date: Oct. 28, 2022

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/879

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/879 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/879 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/879 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/879 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 879 ; shasum -c files.sha'

Storage requirements: 8.4G

Biological Sample:

p120RasGAP SH2-SH3-SH2 in complex with p190RhoGAP doubly phosphorylated peptide

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS BEAMLINE 24-ID-C

Data Creation Date:

Feb. 14, 2019

Related Datasets:

None


Cite this Dataset

Stiegler, AL; Vish, KJ; Boggon, TJ. 2022. "X-Ray Diffraction data for: p120RasGAP SH2-SH3-SH2 in complex with p190RhoGAP doubly phosphorylated peptide. PDB Code 8DGQ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/879.

Download Citation

Dataset Description

Four sweeps

Project Members

Name Additional Roles Affiliation While Working on the Project
Titus J BoggonDepositorYale University
Amy L StieglerData CollectorYale University
Kimberly J VishYale University
Titus BoggonPIYale University School of Medicine

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP4

Files:

/programs/datagrid/879/TJB2_14_Amy_2_2_####.cbf

Images:

1 - 360

Beam:

(216.81, 225.41) -> (216.81, 225.45)

Distance:

350.0 -> 349.83

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.85 5.02 1.85
Low resolution limit 113.4 113.61 1.88
Completeness 100.0 100.0 99.9
Multiplicity 22.2 24.1 7.1
I/sigma 10.7 28.2 0.7
Rmerge 0.181 0.088 2.356
CC half 0.998 0.997 0.307
Anomalous completeness 99.9 100.0 99.0
Anomalous multiplicity 11.7 11.7 11.7
Cell 55.01 113.4 118.68 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP4

Files:

/programs/datagrid/879/TJB2_14_Amy_2_2_####.cbf

Images:

1 - 360

Beam:

(216.81, 225.41) -> (216.81, 225.44)

Distance:

350.0 -> 349.69

Spacegroup:

P 2 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.77 4.8 1.77
Low resolution limit 118.7 118.97 1.8
Completeness 99.9 100.0 97.6
Multiplicity 25.6 25.0 24.2
I/sigma 5.6 19.8 0.4
Rmerge 0.271 0.113 4.275
CC half 0.996 0.997 0.472
Anomalous completeness 99.9 100.0 97.5
Anomalous multiplicity 13.4 13.4 13.4
Cell 55.017 113.226 118.698 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.