X-Ray Diffraction data from p120RasGAP SH3 domain in complex with DLC1 GAP domain, source of 7TPB structure

Data DOI: 10.15785/SBGRID/876 | ID: 876

Publication DOI: 10.1038/s41467-022-32541-4

7TPB Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Boggon Laboratory, Yale University School of Medicine

Release Date: Oct. 28, 2022

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/876

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/876 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/876 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/876 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/876 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 876 ; shasum -c files.sha'

Storage requirements: 17G

Biological Sample:

p120RasGAP SH3 domain in complex with DLC1 GAP domain

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS BEAMLINE 24-ID-E

Data Creation Date:

July 11, 2019

Related Datasets:

None


Cite this Dataset

Stiegler, AL; Boggon, TJ. 2022. "X-Ray Diffraction data for: p120RasGAP SH3 domain in complex with DLC1 GAP domain. PDB Code 7TPB", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/876.

Download Citation

Dataset Description

Two sweeps, native

Project Members

Name Additional Roles Affiliation While Working on the Project
Titus J BoggonDepositorYale University
Amy L StieglerData CollectorYale University
Titus BoggonPIYale University School of Medicine

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP2

Files:

/programs/datagrid/876/TJB_10_3_2_1_######.cbf

Images:

1 - 360

Beam:

(164.41, 154.49) -> (164.41, 154.47)

Distance:

430.0 -> 430.19

Spacegroup:

H 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.13 8.47 3.13
Low resolution limit 41.39 41.39 3.18
Completeness 100.0 99.9 99.8
Multiplicity 9.8 10.2 5.1
I/sigma 9.2 30.3 1.0
Rmerge 0.188 0.073 1.54
CC half 0.997 0.996 0.222
Anomalous completeness 98.7 99.3 96.4
Anomalous multiplicity 4.9 4.9 4.9
Cell 143.38 143.38 152.06 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP2

Files:

/programs/datagrid/876/TJB_10_3_2_1_######.cbf

Images:

1 - 360

Beam:

(164.41, 154.49) -> (164.41, 154.46)

Distance:

430.0 -> 429.65

Spacegroup:

H 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.13 8.49 3.13
Low resolution limit 57.48 57.49 3.18
Completeness 100.0 100.0 99.8
Multiplicity 9.8 10.2 5.1
I/sigma 9.3 31.1 1.0
Rmerge 0.187 0.073 1.559
CC half 0.998 0.998 0.233
Anomalous completeness 98.7 99.3 96.4
Anomalous multiplicity 4.9 4.9 4.9
Cell 143.39 143.39 152.07 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP2

Files:

/programs/datagrid/876/TJB_10_3_2_1_######.cbf

Images:

1 - 360

Beam:

(164.41, 154.49) -> (164.41, 154.48)

Distance:

430.0 -> 423.58

Spacegroup:

R 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.01 8.15 3.01
Low resolution limit 64.72 64.74 3.06
Completeness 100.0 100.0 100.0
Multiplicity 10.8 10.7 10.8
I/sigma 4.2 28.3 0.2
Rmerge 0.241 0.092 2.869
CC half 0.996 0.998 0.404
Anomalous completeness 99.2 99.7 98.6
Anomalous multiplicity 5.4 5.4 5.4
Cell 143.17 143.17 151.761 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.