X-Ray Diffraction data from S1 nuclease in complex with cytidine-5'-monophosphate, source of 7QTB structure

Data DOI: 10.15785/SBGRID/885 | ID: 885

7QTB Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Dohnalek Laboratory, Institute of Biotechnology of the Czech Academy of Sciences

Release Date: April 1, 2022

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/885

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/885 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/885 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/885 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/885 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 885 ; shasum -c files.sha'

Storage requirements: 21G

Biological Sample:

S1 nuclease in complex with cytidine-5'-monophosphate

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

Petra III, BL P13, DESY, Hamburg

Data Creation Date:

Oct. 18, 2016

Related Datasets:

None


Cite this Dataset

Adamkova, K; Kolenko, P; Koval, T; Oestergaard, LH.; Dohnalek, J. 2022. "X-Ray Diffraction data for: S1 nuclease in complex with cytidine-5'-monophosphate. PDB Code 7QTB", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/885.

Download Citation

Dataset Description

native datasets

Project Members

Name Additional Roles Affiliation While Working on the Project
Kristyna AdamkovaData Collector, DepositorInstitute of Biotechnology of the Czech Academy of Sciences, v.v.i
Jan DohnalekData CollectorInstitute of Biotechnology of the Czech Academy of Sciences, v.v.i
Petr KolenkoData CollectorFaculty of Nuclear Sciences and Physical Engineering
Tomas KovalData CollectorInstitute of Biotechnology of the Czech Academy of Sciences, v.v.i
Lars H. OestergaardNovozymes A/S
Jan DohnalekPIInstitute of Biotechnology of the Czech Academy of Sciences

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0332

Sweep:

SWEEP1

Files:

/programs/datagrid/885/skr6-go_w1_2_#####.cbf

Images:

1 - 3600

Beam:

(216.76, 210.27) -> (216.76, 210.15)

Distance:

141.71 -> 141.88

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 0.96 2.61 0.96
Low resolution limit 21.56 21.57 0.98
Completeness 70.1 92.9 3.7
Multiplicity 3.6 3.6 2.6
I/sigma 15.2 46.9 1.0
Rmerge 0.029 0.015 0.75
CC half 0.999 0.999 0.511
Anomalous completeness 63.9 82.5 2.7
Anomalous multiplicity 1.9 1.9 1.9
Cell 43.08 48.46 65.55 107.47 90.08 105.7

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0332

Sweep:

SWEEP1

Files:

/programs/datagrid/885/skr6-go_w1_2_#####.cbf

Images:

1 - 3600

Beam:

(216.76, 210.27) -> (216.76, 212.34)

Distance:

141.71 -> 142.07

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 4.92 11.82 4.92
Low resolution limit 17.2 17.2 5.0
Completeness 99.3 100.0 100.0
Multiplicity 3.6 3.2 3.6
I/sigma 1.1 1.1 1.2
Rmerge 0.356 0.372 0.305
CC half 0.524 0.735 0.536
Anomalous completeness 90.2 79.6 89.1
Anomalous multiplicity 1.9 1.9 1.9
Cell 32.8 43.12 47.14 103.45 109.53 90.01

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0332

Sweep:

SWEEP1

Files:

/programs/datagrid/885/skr6-go_w1_2_#####.cbf

Images:

1 - 3600

Beam:

(216.76, 210.27) -> (216.76, 210.14)

Distance:

141.71 -> 141.89

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 0.97 2.63 0.97
Low resolution limit 44.32 44.37 0.99
Completeness 69.2 93.5 5.0
Multiplicity 3.7 3.7 3.4
I/sigma 12.5 55.0 0.4
Rmerge 0.035 0.02 0.707
CC half 0.996 0.993 0.339
Anomalous completeness 64.8 88.9 4.1
Anomalous multiplicity 1.9 1.9 1.9
Cell 43.09 48.474 65.57 107.474 90.066 105.708

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.