X-Ray Diffraction data from Mycobacterial methylmannose polysaccharide hydrolase, source of 7QSJ structure

Data DOI: 10.15785/SBGRID/874 | ID: 874

Publication DOI: 10.1038/s42003-023-04448-3

7QSJ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Pereira Laboratory, IBMC/i3S, Universidade do Porto

Release Date: 24 Jan 2023

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/874

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/874 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/874 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/874 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/874 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 874 ; shasum -c files.sha'

Storage requirements: 8.4G

Biological Sample:

Mycobacterial methylmannose polysaccharide hydrolase

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

BL13-XALOC ALBA

Data Creation Date:

29 Oct 2014

Related Datasets:

None


Cite this Dataset

Manso, JA; Ripoll-Rozada, J; Pereira, P. 2023. "X-Ray Diffraction data for: Mycobacterial methylmannose polysaccharide hydrolase. PDB Code 7QSJ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/874.

Download Citation

Dataset Description

X-Ray Diffraction data from M. hassiacum MmpH, source of 7QSJ structure (native data set)

Project Members

Name Additional Roles Affiliation While Working on the Project
Pedro PereiraData Collector, DepositorIBMC - Instituto de Biologia Molecular e Celular
Jose A MansoData CollectorIBMC - Instituto de Biologia Molecular e Celular
Jorge Ripoll-RozadaData CollectorIBMC - Instituto de Biologia Molecular e Celular
Pedro PereiraPIUniversidade do Porto

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.98086

Sweep:

SWEEP1

Files:

/programs/datagrid/874/BI1917_3_####.cbf

Images:

1 - 1440

Beam:

(224.22, 212.54) -> (224.22, 212.58)

Distance:

241.95 -> 240.88

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.26 3.42 1.26
Low resolution limit 35.8 35.81 1.28
Completeness 96.1 99.7 65.6
Multiplicity 6.2 6.5 4.1
I/sigma 14.5 59.4 0.5
Rmerge 0.046 0.019 2.237
CC half 1.0 1.0 0.331
Anomalous completeness 95.0 98.8 63.1
Anomalous multiplicity 3.2 3.2 3.2
Cell 47.03 51.81 149.13 90.0 95.1 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.98086

Sweep:

SWEEP1

Files:

/programs/datagrid/874/BI1917_3_####.cbf

Images:

1 - 1440

Beam:

(224.22, 212.54) -> (224.22, 212.58)

Distance:

241.95 -> 240.97

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.26 3.42 1.26
Low resolution limit 46.84 46.88 1.28
Completeness 96.1 99.7 65.6
Multiplicity 6.2 6.5 4.1
I/sigma 14.5 59.3 0.5
Rmerge 0.046 0.019 2.235
CC half 1.0 1.0 0.33
Anomalous completeness 95.0 98.8 63.2
Anomalous multiplicity 3.2 3.2 3.2
Cell 47.03 51.81 149.13 90.0 95.1 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.98086

Sweep:

SWEEP1

Files:

/programs/datagrid/874/BI1917_3_####.cbf

Images:

1 - 1440

Beam:

(224.22, 212.54) -> (224.22, 212.58)

Distance:

241.95 -> 241.27

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.2 3.26 1.2
Low resolution limit 148.57 149.73 1.22
Completeness 89.7 100.0 40.9
Multiplicity 6.0 6.6 3.5
I/sigma 9.2 73.3 0.1
Rmerge 0.066 0.025 2.313
CC half 0.999 0.999 0.329
Anomalous completeness 88.8 100.0 40.0
Anomalous multiplicity 3.1 3.1 3.1
Cell 47.052 51.811 149.166 90.0 95.106 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.