Data DOI: 10.15785/SBGRID/960 | ID: 960
Publication DOI: Not yet available
7YZX Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Cooney Laboratory, University of Limerick
Release Date: 9 Sep 2022
1. If this dataset is locally available, it should be accessable at /programs/datagrid/960
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/960 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/960 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/960 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/960 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 960 ; shasum -c files.sha'
Storage requirements: 7.6G
Biological Sample:
C5a-peptidase (ScpA) D783A mutant
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
Diamond Light Source, beamline I24.
Data Creation Date:
20 Feb 2020
Related Datasets:
None
Kagawa, TF.; Cooney, JC.. 2022. "X-Ray Diffraction data for: C5a-peptidase (ScpA) D783A mutant. PDB Code 7YZX", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/960.
Native dataset.
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Todd F. Kagawa | Data Collector, Depositor | University of Limerick |
| Jakki C. Cooney | Data Collector, PI | University of Limerick |
DECTRIS PILATUS 6M detector. 1300 frames processed with XDS to 1.9 angstrom resolution. Data indexed in space group P6333.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.96864
Sweep:
SWEEP1
Files:
/programs/datagrid/960/783-1_1_####.cbf
Images:
1 - 1300
Beam:
(224.81, 216.99) -> (224.81, 216.89)
Distance:
331.61 -> 330.82
Spacegroup:
P 63 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.0 | 5.43 | 2.0 |
| Low resolution limit | 101.86 | 102.0 | 2.03 |
| Completeness | 100.0 | 99.1 | 100.0 |
| Multiplicity | 13.8 | 12.2 | 14.2 |
| I/sigma | 12.8 | 40.3 | 1.1 |
| Rmerge | 0.131 | 0.044 | 2.91 |
| CC half | 0.998 | 0.999 | 0.331 |
| Anomalous completeness | 99.8 | 99.5 | 99.9 |
| Anomalous multiplicity | 7.3 | 7.3 | 7.3 |
| Cell | 169.08 | 169.08 | 141.8 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.96864
Sweep:
SWEEP1
Files:
/programs/datagrid/960/783-1_1_####.cbf
Images:
1 - 1300
Beam:
(224.81, 216.99) -> (224.81, 216.88)
Distance:
331.61 -> 331.67
Spacegroup:
P 63 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.99 | 5.4 | 1.99 |
| Low resolution limit | 101.87 | 102.0 | 2.02 |
| Completeness | 100.0 | 99.1 | 100.0 |
| Multiplicity | 13.8 | 12.2 | 14.2 |
| I/sigma | 12.7 | 40.3 | 1.1 |
| Rmerge | 0.131 | 0.044 | 2.988 |
| CC half | 0.998 | 0.998 | 0.302 |
| Anomalous completeness | 99.8 | 99.6 | 99.9 |
| Anomalous multiplicity | 7.3 | 7.3 | 7.3 |
| Cell | 169.09 | 169.09 | 141.81 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.96864
Sweep:
SWEEP1
Files:
/programs/datagrid/960/783-1_1_####.cbf
Images:
1 - 1300
Beam:
(224.81, 216.99) -> (224.81, 216.88)
Distance:
331.61 -> 332.17
Spacegroup:
P 63 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.9 | 5.15 | 1.9 |
| Low resolution limit | 141.57 | 141.97 | 1.93 |
| Completeness | 100.0 | 99.5 | 99.6 |
| Multiplicity | 13.9 | 12.7 | 14.3 |
| I/sigma | 5.6 | 34.8 | 0.1 |
| Rmerge | 0.211 | 0.061 | 5.618 |
| CC half | 0.994 | 0.997 | 0.117 |
| Anomalous completeness | 99.9 | 100.0 | 99.6 |
| Anomalous multiplicity | 7.3 | 7.3 | 7.3 |
| Cell | 168.617 | 168.617 | 141.571 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
