X-Ray Diffraction data from Escherichia coli DOS, source of 1V9Z structure

Data DOI: 10.15785/SBGRID/134 | ID: 134

Publication DOI: 10.1074/jbc.M314199200

1V9Z Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Raman Laboratory, University of Maryland

Release Date: June 5, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/134

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/134 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/134 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/134 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/134 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 134 ; shasum -c files.sha'

Storage requirements: 11G

Biological Sample:

Escherichia coli DOS

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

BL 9-2, Stanford Synchrotron Radiation Laboratory

Data Creation Date:

July 11, 2002

Related Datasets:

133, 135, 136, 137


Cite this Dataset

Lee, D; Raman, CS. 2015. "X-Ray Diffraction data for: Escherichia coli DOS. PDB Code 1V9Z", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/134.

Download Citation

Dataset Description

Three-wavelength Fe-MAD dataset (inverse beam): 9100.36 eV, 7133.73 eV, 7124.91 eV. Data are complete to 1.9 A resolution.

Project Members

Name Additional Roles Affiliation While Working on the Project
C S RamanData Collector, DepositorUniversity of Texas Medical School
Dong-Sun LeeData CollectorUniversity of Texas Medical School
C S RamanPIUniversity of Maryland

Reprocessing Instructions

XDS, MOSFLM, HKL2000 all work fine on this dataset.

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

WAVE3 - 1.74016

Sweep:

SWEEP6

Files:

/programs/datagrid/134/dosn40_2_E3_###.img

Images:

181 - 280

Beam:

(157.5, 157.5) -> (157.5, 157.55)

Distance:

100.0 -> 99.37

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/WAVE3:

ALL LOW HIGH
High resolution limit 2.24 6.06 2.24
Low resolution limit 35.67 35.67 2.27
Completeness 99.3 100.0 99.7
Multiplicity 6.7 6.8 3.6
I/sigma 9.1 20.3 1.4
Rmerge 0.135 0.062 0.864
CC half 0.995 0.996 0.548
Anomalous completeness 99.3 99.8 98.5
Anomalous multiplicity 3.6 3.6 3.6
Cell 46.564 69.1 83.005 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

WAVE3 - 1.74016

Sweep:

SWEEP6

Files:

/programs/datagrid/134/dosn40_2_E3_###.img

Images:

181 - 280

Beam:

(157.5, 157.5) -> (157.5, 157.5)

Distance:

100.0 -> 99.27

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/WAVE3:

ALL LOW HIGH
High resolution limit 2.17 5.88 2.17
Low resolution limit 38.61 38.62 2.21
Completeness 99.5 99.1 99.3
Multiplicity 7.0 6.9 3.7
I/sigma 13.7 35.9 1.3
Rmerge 0.105 0.046 1.031
CC half 0.995 0.995 0.54
Anomalous completeness 98.8 98.2 95.6
Anomalous multiplicity 3.8 3.8 3.8
Cell 46.56 69.08 82.94 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

WAVE3 - 1.74016

Sweep:

SWEEP6

Files:

/programs/datagrid/134/dosn40_2_E3_###.img

Images:

181 - 280

Beam:

(157.5, 157.5) -> (157.5, 157.5)

Distance:

100.0 -> 99.24

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/WAVE3:

ALL LOW HIGH
High resolution limit 2.16 5.86 2.16
Low resolution limit 40.6 40.61 2.2
Completeness 99.5 98.9 99.3
Multiplicity 7.0 6.9 3.7
I/sigma 13.5 35.8 1.3
Rmerge 0.106 0.046 1.052
CC half 0.996 0.995 0.464
Anomalous completeness 98.8 98.2 95.5
Anomalous multiplicity 3.8 3.8 3.8
Cell 46.56 69.08 82.94 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

WAVE3 - 1.74016

Sweep:

SWEEP6

Files:

/programs/datagrid/134/dosn40_2_E3_###.img

Images:

181 - 280

Beam:

(157.5, 157.5) -> (157.5, 157.47)

Distance:

100.0 -> 99.43

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/WAVE3:

ALL LOW HIGH
High resolution limit 2.42 6.57 2.42
Low resolution limit 38.73 38.74 2.47
Completeness 69.6 62.4 70.5
Multiplicity 2.7 3.4 1.3
I/sigma 5.9 15.2 0.9
Rmerge 0.087 0.042 0.42
CC half 0.992 0.996 0.707
Anomalous completeness 64.4 60.8 19.5
Anomalous multiplicity 1.4 1.4 1.4
Cell 46.52 69.077 82.9 89.92 90.031 89.93

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.